SNP Detail Info-rs11572505

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.216920702T>C
GRCh37.p13 chr 1	NC_000001.10:g.217094044T>C
ESRRG RefSeqGene	NG_029784.1:g.222054A>G

Gene: ESRRG, estrogen related receptor gamma(minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ESRRG transcript variant 4	NM_001134285.2:c.	N/A	Intron Variant
ESRRG transcript variant 6	NM_001243505.1:c.	N/A	Intron Variant
ESRRG transcript variant 7	NM_001243506.1:c.	N/A	Intron Variant
ESRRG transcript variant 8	NM_001243507.1:c.	N/A	Intron Variant
ESRRG transcript variant 9	NM_001243509.1:c.	N/A	Intron Variant
ESRRG transcript variant 10	NM_001243510.2:c.	N/A	Intron Variant
ESRRG transcript variant 11	NM_001243511.2:c.	N/A	Intron Variant
ESRRG transcript variant 12	NM_001243512.1:c.	N/A	Intron Variant
ESRRG transcript variant 13	NM_001243513.1:c.	N/A	Intron Variant
ESRRG transcript variant 2	NM_206594.2:c.	N/A	Intron Variant
ESRRG transcript variant 3	NM_206595.2:c.	N/A	Intron Variant
ESRRG transcript variant 14	NM_001243514.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant 15	NM_001243515.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant 16	NM_001243518.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant 17	NM_001243519.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant 1	NM_001438.3:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X2	XM_011509265.2:c.	N/A	Intron Variant
ESRRG transcript variant X7	XM_011509266.2:c.	N/A	Intron Variant
ESRRG transcript variant X23	XM_011509274.1:c.	N/A	Intron Variant
ESRRG transcript variant X29	XM_011509275.1:c.	N/A	Intron Variant
ESRRG transcript variant X28	XM_011509277.1:c.	N/A	Intron Variant
ESRRG transcript variant X30	XM_011509278.1:c.	N/A	Intron Variant
ESRRG transcript variant X1	XM_017000621.1:c.	N/A	Intron Variant
ESRRG transcript variant X3	XM_017000622.1:c.	N/A	Intron Variant
ESRRG transcript variant X4	XM_017000623.1:c.	N/A	Intron Variant
ESRRG transcript variant X5	XM_017000624.1:c.	N/A	Intron Variant
ESRRG transcript variant X6	XM_017000625.1:c.	N/A	Intron Variant
ESRRG transcript variant X18	XM_017000631.1:c.	N/A	Intron Variant
ESRRG transcript variant X19	XM_017000632.1:c.	N/A	Intron Variant
ESRRG transcript variant X21	XM_017000633.1:c.	N/A	Intron Variant
ESRRG transcript variant X21	XM_017000634.1:c.	N/A	Intron Variant
ESRRG transcript variant X25	XM_017000636.1:c.	N/A	Intron Variant
ESRRG transcript variant X26	XM_017000637.1:c.	N/A	Intron Variant
ESRRG transcript variant X32	XM_017000638.1:c.	N/A	Intron Variant
ESRRG transcript variant X36	XM_017000639.1:c.	N/A	Intron Variant
ESRRG transcript variant X34	XM_017000640.1:c.	N/A	Intron Variant
ESRRG transcript variant X36	XM_017000642.1:c.	N/A	Intron Variant
ESRRG transcript variant X37	XM_017000643.1:c.	N/A	Intron Variant
ESRRG transcript variant X38	XM_017000644.1:c.	N/A	Intron Variant
ESRRG transcript variant X39	XM_017000645.1:c.	N/A	Intron Variant
ESRRG transcript variant X40	XM_017000646.1:c.	N/A	Intron Variant
ESRRG transcript variant X41	XM_017000647.1:c.	N/A	Intron Variant
ESRRG transcript variant X42	XM_017000648.1:c.	N/A	Intron Variant
ESRRG transcript variant X43	XM_017000649.1:c.	N/A	Intron Variant
ESRRG transcript variant X8	XM_011509267.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X9	XM_011509268.2:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X10	XM_011509269.2:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X11	XM_011509270.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X15	XM_011509271.2:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X22	XM_011509276.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X27	XM_011509279.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X31	XM_011509280.2:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X11	XM_017000626.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X12	XM_017000627.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X13	XM_017000628.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X15	XM_017000629.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X14	XM_017000630.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X24	XM_017000635.1:c.	N/A	Genic Upstream Transcript Variant
ESRRG transcript variant X37	XM_017000641.1:c.	N/A	Genic Upstream Transcript Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.982	C=0.018
1000Genomes	American	Sub	694	T=0.940	C=0.060
1000Genomes	East Asian	Sub	1008	T=0.931	C=0.069
1000Genomes	Europe	Sub	1006	T=0.930	C=0.070
1000Genomes	Global	Study-wide	5008	T=0.940	C=0.060
1000Genomes	South Asian	Sub	978	T=0.900	C=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.946	C=0.054
The Genome Aggregation Database	African	Sub	8730	T=0.979	C=0.021
The Genome Aggregation Database	American	Sub	838	T=0.960	C=0.040
The Genome Aggregation Database	East Asian	Sub	1616	T=0.949	C=0.051
The Genome Aggregation Database	Europe	Sub	18494	T=0.926	C=0.074
The Genome Aggregation Database	Global	Study-wide	29980	T=0.943	C=0.056
The Genome Aggregation Database	Other	Sub	302	T=0.870	C=0.130
Trans-Omics for Precision Medicine	Global	Study-wide	29116	T=0.949	C=0.050
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.937	C=0.063

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs11572505	0.00011	alcohol dependence	20201924

eQTL of rs11572505 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs11572505 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	217100848	217100934	E068	6804
chr1	217118352	217118422	E068	24308
chr1	217119109	217119309	E068	25065
chr1	217119536	217119616	E068	25492
chr1	217083547	217083667	E069	-10377
chr1	217118352	217118422	E070	24308
chr1	217118489	217118649	E070	24445
chr1	217118676	217118785	E070	24632
chr1	217119109	217119309	E070	25065
chr1	217097084	217097153	E071	3040
chr1	217083547	217083667	E072	-10377
chr1	217100127	217100275	E072	6083
chr1	217119536	217119616	E073	25492
chr1	217083547	217083667	E074	-10377
chr1	217100127	217100275	E074	6083
chr1	217100335	217100810	E074	6291
chr1	217100848	217100934	E074	6804
chr1	217063648	217063803	E081	-30241
chr1	217064274	217064577	E081	-29467
chr1	217064632	217064687	E081	-29357
chr1	217064840	217064910	E081	-29134
chr1	217074179	217074403	E081	-19641
chr1	217074451	217074505	E081	-19539
chr1	217119536	217119616	E081	25492
chr1	217126261	217126436	E081	32217
chr1	217100127	217100275	E082	6083
chr1	217100335	217100810	E082	6291

rs11572505

Genomic Coordinates

Gene: ESRRG, estrogen related receptor gamma(minus strand)

Population Frequency

P-Value

eQTL of rs11572505 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs11572505 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)