SNP Detail Info-rs11579497

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0202 (6044/29872,GnomAD)
A=0195 (5696/29118,TOPMED)
A=0208 (1044/5008,1000G)
A=0182 (700/3854,ALSPAC)
A=0185 (687/3708,TWINSUK)

Position: chr1:196092581 (GRCh38.p7) (1q31.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 39 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.196092581G>A
GRCh37.p13 chr 1	NC_000001.10:g.196061711G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.781	A=0.219
1000Genomes	American	Sub	694	G=0.830	A=0.170
1000Genomes	East Asian	Sub	1008	G=0.837	A=0.163
1000Genomes	Europe	Sub	1006	G=0.822	A=0.178
1000Genomes	Global	Study-wide	5008	G=0.792	A=0.208
1000Genomes	South Asian	Sub	978	G=0.700	A=0.300
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.818	A=0.182
The Genome Aggregation Database	African	Sub	8698	G=0.779	A=0.221
The Genome Aggregation Database	American	Sub	838	G=0.850	A=0.150
The Genome Aggregation Database	East Asian	Sub	1596	G=0.820	A=0.180
The Genome Aggregation Database	Europe	Sub	18438	G=0.802	A=0.197
The Genome Aggregation Database	Global	Study-wide	29872	G=0.797	A=0.202
The Genome Aggregation Database	Other	Sub	302	G=0.770	A=0.230
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.804	A=0.195
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.815	A=0.185

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs11579497	2.6E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	196066440	196066490	E067	4729
chr1	196066674	196066759	E067	4963
chr1	196066852	196066954	E067	5141
chr1	196084863	196085141	E067	23152
chr1	196066852	196066954	E068	5141
chr1	196067294	196067384	E068	5583
chr1	196067424	196067480	E068	5713
chr1	196084863	196085141	E068	23152
chr1	196066440	196066490	E069	4729
chr1	196066674	196066759	E069	4963
chr1	196066852	196066954	E069	5141
chr1	196067294	196067384	E069	5583
chr1	196067424	196067480	E069	5713
chr1	196068079	196068129	E069	6368
chr1	196084863	196085141	E069	23152
chr1	196066440	196066490	E070	4729
chr1	196066674	196066759	E070	4963
chr1	196066852	196066954	E070	5141
chr1	196066440	196066490	E071	4729
chr1	196066674	196066759	E071	4963
chr1	196066852	196066954	E071	5141
chr1	196067294	196067384	E071	5583
chr1	196084863	196085141	E071	23152
chr1	196066440	196066490	E072	4729
chr1	196066674	196066759	E072	4963
chr1	196066852	196066954	E072	5141
chr1	196067294	196067384	E072	5583
chr1	196067424	196067480	E072	5713
chr1	196075137	196075332	E072	13426
chr1	196084863	196085141	E072	23152
chr1	196067294	196067384	E073	5583
chr1	196067424	196067480	E073	5713
chr1	196066440	196066490	E074	4729
chr1	196066674	196066759	E074	4963
chr1	196066852	196066954	E074	5141
chr1	196067294	196067384	E074	5583
chr1	196067424	196067480	E074	5713
chr1	196084863	196085141	E074	23152
chr1	196060936	196061134	E081	-577

rs11579497