SNP Detail Info-rs11582424

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.154391509A>C
GRCh37.p13 chr 1	NC_000001.10:g.154363985A>C

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.705	C=0.295
1000Genomes	American	Sub	694	A=0.700	C=0.300
1000Genomes	East Asian	Sub	1008	A=0.751	C=0.249
1000Genomes	Europe	Sub	1006	A=0.710	C=0.290
1000Genomes	Global	Study-wide	5008	A=0.721	C=0.279
1000Genomes	South Asian	Sub	978	A=0.740	C=0.260
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.701	C=0.299
The Genome Aggregation Database	African	Sub	8708	A=0.710	C=0.290
The Genome Aggregation Database	American	Sub	838	A=0.680	C=0.320
The Genome Aggregation Database	East Asian	Sub	1614	A=0.727	C=0.273
The Genome Aggregation Database	Europe	Sub	18460	A=0.718	C=0.281
The Genome Aggregation Database	Global	Study-wide	29918	A=0.715	C=0.284
The Genome Aggregation Database	Other	Sub	298	A=0.750	C=0.250
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.701	C=0.298
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.714	C=0.286

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet
17357077	Admixture mapping of an allele affecting interleukin 6 soluble receptor and interleukin 6 levels.	Reich D	Am J Hum Genet

P-Value

SNP ID	p-value	Traits	Study
rs11582424	0.000604	alcohol dependence	24277619

eQTL of rs11582424 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs11582424 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	154381453	154381503	E067	17468
chr1	154381848	154381941	E067	17863
chr1	154382117	154382192	E067	18132
chr1	154390594	154391509	E067	26609
chr1	154391624	154393122	E067	27639
chr1	154393357	154393664	E067	29372
chr1	154393728	154393817	E067	29743
chr1	154394134	154394292	E067	30149
chr1	154394684	154394789	E067	30699
chr1	154394967	154395363	E067	30982
chr1	154395436	154395499	E067	31451
chr1	154395544	154395598	E067	31559
chr1	154395885	154396482	E067	31900
chr1	154396748	154396950	E067	32763
chr1	154397216	154397270	E067	33231
chr1	154399716	154400696	E067	35731
chr1	154400830	154400990	E067	36845
chr1	154401218	154401329	E067	37233
chr1	154401499	154402235	E067	37514
chr1	154402530	154402598	E067	38545
chr1	154402718	154402821	E067	38733
chr1	154402835	154402959	E067	38850
chr1	154402972	154403119	E067	38987
chr1	154314755	154314863	E068	-49122
chr1	154314960	154315005	E068	-48980
chr1	154315136	154315217	E068	-48768
chr1	154324632	154324745	E068	-39240
chr1	154381453	154381503	E068	17468
chr1	154381848	154381941	E068	17863
chr1	154382117	154382192	E068	18132
chr1	154382753	154382940	E068	18768
chr1	154383020	154383132	E068	19035
chr1	154387145	154387317	E068	23160
chr1	154387511	154387575	E068	23526
chr1	154387598	154387658	E068	23613
chr1	154387959	154387999	E068	23974
chr1	154388978	154389032	E068	24993
chr1	154389183	154389237	E068	25198
chr1	154389302	154389406	E068	25317
chr1	154389544	154389598	E068	25559
chr1	154389745	154389801	E068	25760
chr1	154389820	154389938	E068	25835
chr1	154390594	154391509	E068	26609
chr1	154391624	154393122	E068	27639
chr1	154393357	154393664	E068	29372
chr1	154393728	154393817	E068	29743
chr1	154394967	154395363	E068	30982
chr1	154395436	154395499	E068	31451
chr1	154395544	154395598	E068	31559
chr1	154395885	154396482	E068	31900
chr1	154396748	154396950	E068	32763
chr1	154397216	154397270	E068	33231
chr1	154399716	154400696	E068	35731
chr1	154400830	154400990	E068	36845
chr1	154401218	154401329	E068	37233
chr1	154401499	154402235	E068	37514
chr1	154402530	154402598	E068	38545
chr1	154405027	154406213	E068	41042
chr1	154406881	154407584	E068	42896
chr1	154324632	154324745	E069	-39240
chr1	154382753	154382940	E069	18768
chr1	154383020	154383132	E069	19035
chr1	154387145	154387317	E069	23160
chr1	154387511	154387575	E069	23526
chr1	154387598	154387658	E069	23613
chr1	154390594	154391509	E069	26609
chr1	154391624	154393122	E069	27639
chr1	154393357	154393664	E069	29372
chr1	154393728	154393817	E069	29743
chr1	154394134	154394292	E069	30149
chr1	154394684	154394789	E069	30699
chr1	154394967	154395363	E069	30982
chr1	154395436	154395499	E069	31451
chr1	154395544	154395598	E069	31559
chr1	154395885	154396482	E069	31900
chr1	154396748	154396950	E069	32763
chr1	154397216	154397270	E069	33231
chr1	154399716	154400696	E069	35731
chr1	154400830	154400990	E069	36845
chr1	154401218	154401329	E069	37233
chr1	154401499	154402235	E069	37514
chr1	154402530	154402598	E069	38545
chr1	154402718	154402821	E069	38733
chr1	154402835	154402959	E069	38850
chr1	154402972	154403119	E069	38987
chr1	154403332	154404828	E069	39347
chr1	154405027	154406213	E069	41042
chr1	154324632	154324745	E070	-39240
chr1	154370642	154370765	E070	6657
chr1	154370821	154370863	E070	6836
chr1	154399716	154400696	E070	35731
chr1	154400830	154400990	E070	36845
chr1	154401218	154401329	E070	37233
chr1	154401499	154402235	E070	37514
chr1	154402530	154402598	E070	38545
chr1	154402718	154402821	E070	38733
chr1	154402835	154402959	E070	38850
chr1	154402972	154403119	E070	38987
chr1	154403332	154404828	E070	39347
chr1	154324632	154324745	E071	-39240
chr1	154381453	154381503	E071	17468
chr1	154381848	154381941	E071	17863
chr1	154382117	154382192	E071	18132
chr1	154382753	154382940	E071	18768
chr1	154383020	154383132	E071	19035
chr1	154386371	154386412	E071	22386
chr1	154386523	154386573	E071	22538
chr1	154389745	154389801	E071	25760
chr1	154389820	154389938	E071	25835
chr1	154390036	154390086	E071	26051
chr1	154390594	154391509	E071	26609
chr1	154391624	154393122	E071	27639
chr1	154393357	154393664	E071	29372
chr1	154393728	154393817	E071	29743
chr1	154394134	154394292	E071	30149
chr1	154394684	154394789	E071	30699
chr1	154394967	154395363	E071	30982
chr1	154395436	154395499	E071	31451
chr1	154395544	154395598	E071	31559
chr1	154397216	154397270	E071	33231
chr1	154399716	154400696	E071	35731
chr1	154400830	154400990	E071	36845
chr1	154401218	154401329	E071	37233
chr1	154401499	154402235	E071	37514
chr1	154402530	154402598	E071	38545
chr1	154405027	154406213	E071	41042
chr1	154324632	154324745	E072	-39240
chr1	154381453	154381503	E072	17468
chr1	154381848	154381941	E072	17863
chr1	154382117	154382192	E072	18132
chr1	154387145	154387317	E072	23160
chr1	154387511	154387575	E072	23526
chr1	154387598	154387658	E072	23613
chr1	154388978	154389032	E072	24993
chr1	154389183	154389237	E072	25198
chr1	154389302	154389406	E072	25317
chr1	154389544	154389598	E072	25559
chr1	154390594	154391509	E072	26609
chr1	154391624	154393122	E072	27639
chr1	154393357	154393664	E072	29372
chr1	154393728	154393817	E072	29743
chr1	154395436	154395499	E072	31451
chr1	154395544	154395598	E072	31559
chr1	154395885	154396482	E072	31900
chr1	154397216	154397270	E072	33231
chr1	154397740	154397918	E072	33755
chr1	154399716	154400696	E072	35731
chr1	154400830	154400990	E072	36845
chr1	154401218	154401329	E072	37233
chr1	154401499	154402235	E072	37514
chr1	154405027	154406213	E072	41042
chr1	154321411	154321451	E073	-42534
chr1	154321544	154321653	E073	-42332
chr1	154321735	154321791	E073	-42194
chr1	154322332	154322377	E073	-41608
chr1	154382753	154382940	E073	18768
chr1	154383020	154383132	E073	19035
chr1	154389745	154389801	E073	25760
chr1	154389820	154389938	E073	25835
chr1	154390594	154391509	E073	26609
chr1	154393357	154393664	E073	29372
chr1	154393728	154393817	E073	29743
chr1	154394134	154394292	E073	30149
chr1	154394684	154394789	E073	30699
chr1	154394967	154395363	E073	30982
chr1	154395436	154395499	E073	31451
chr1	154395544	154395598	E073	31559
chr1	154395885	154396482	E073	31900
chr1	154396748	154396950	E073	32763
chr1	154397216	154397270	E073	33231
chr1	154399716	154400696	E073	35731
chr1	154400830	154400990	E073	36845
chr1	154401218	154401329	E073	37233
chr1	154401499	154402235	E073	37514
chr1	154405027	154406213	E073	41042
chr1	154406881	154407584	E073	42896
chr1	154381453	154381503	E074	17468
chr1	154381848	154381941	E074	17863
chr1	154383020	154383132	E074	19035
chr1	154387145	154387317	E074	23160
chr1	154387511	154387575	E074	23526
chr1	154387598	154387658	E074	23613
chr1	154388978	154389032	E074	24993
chr1	154389183	154389237	E074	25198
chr1	154389302	154389406	E074	25317
chr1	154389544	154389598	E074	25559
chr1	154389745	154389801	E074	25760
chr1	154390594	154391509	E074	26609
chr1	154391624	154393122	E074	27639
chr1	154393357	154393664	E074	29372
chr1	154393728	154393817	E074	29743
chr1	154394134	154394292	E074	30149
chr1	154394684	154394789	E074	30699
chr1	154394967	154395363	E074	30982
chr1	154395436	154395499	E074	31451
chr1	154395544	154395598	E074	31559
chr1	154395885	154396482	E074	31900
chr1	154396748	154396950	E074	32763
chr1	154399716	154400696	E074	35731
chr1	154400830	154400990	E074	36845
chr1	154401218	154401329	E074	37233
chr1	154401499	154402235	E074	37514
chr1	154402530	154402598	E074	38545
chr1	154402718	154402821	E074	38733
chr1	154405027	154406213	E074	41042
chr1	154406881	154407584	E074	42896
chr1	154324443	154324493	E081	-39492
chr1	154324632	154324745	E081	-39240
chr1	154390594	154391509	E081	26609
chr1	154391624	154393122	E081	27639
chr1	154402718	154402821	E081	38733
chr1	154402835	154402959	E081	38850
chr1	154402972	154403119	E081	38987
chr1	154406881	154407584	E081	42896
chr1	154399716	154400696	E082	35731

rs11582424

Genomic Coordinates

Population Frequency

P-Value

eQTL of rs11582424 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs11582424 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)