SNP Detail Info-rs11605652

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0313 (9386/29930,GnomAD)
A=0259 (7561/29118,TOPMED)
A=0208 (1041/5008,1000G)
A=0406 (1563/3854,ALSPAC)
A=0430 (1595/3708,TWINSUK)

Position: chr11:105197312 (GRCh38.p7) (11q22.3)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.105197312G>A
GRCh37.p13 chr 11	NC_000011.9:g.105068039G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.929	A=0.071
1000Genomes	American	Sub	694	G=0.790	A=0.210
1000Genomes	East Asian	Sub	1008	G=0.719	A=0.281
1000Genomes	Europe	Sub	1006	G=0.591	A=0.409
1000Genomes	Global	Study-wide	5008	G=0.792	A=0.208
1000Genomes	South Asian	Sub	978	G=0.890	A=0.110
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.594	A=0.406
The Genome Aggregation Database	African	Sub	8704	G=0.881	A=0.119
The Genome Aggregation Database	American	Sub	838	G=0.770	A=0.230
The Genome Aggregation Database	East Asian	Sub	1612	G=0.712	A=0.288
The Genome Aggregation Database	Europe	Sub	18474	G=0.589	A=0.411
The Genome Aggregation Database	Global	Study-wide	29930	G=0.686	A=0.313
The Genome Aggregation Database	Other	Sub	302	G=0.690	A=0.310
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.740	A=0.259
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.570	A=0.430

PMID	Title	Author	Journal
29460428	Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.	Gelernter J	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11605652	7E-06	alcohol dependence	29460428

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11605652