Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.95557357T>C |
GRCh37.p13 chr 11 | NC_000011.9:g.95290521T>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.826 | C=0.174 |
1000Genomes | American | Sub | 694 | T=0.610 | C=0.390 |
1000Genomes | East Asian | Sub | 1008 | T=0.833 | C=0.167 |
1000Genomes | Europe | Sub | 1006 | T=0.829 | C=0.171 |
1000Genomes | Global | Study-wide | 5008 | T=0.808 | C=0.192 |
1000Genomes | South Asian | Sub | 978 | T=0.880 | C=0.120 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.827 | C=0.173 |
The Genome Aggregation Database | African | Sub | 8708 | T=0.832 | C=0.168 |
The Genome Aggregation Database | American | Sub | 834 | T=0.620 | C=0.380 |
The Genome Aggregation Database | East Asian | Sub | 1606 | T=0.785 | C=0.215 |
The Genome Aggregation Database | Europe | Sub | 18466 | T=0.813 | C=0.186 |
The Genome Aggregation Database | Global | Study-wide | 29916 | T=0.812 | C=0.187 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.870 | C=0.130 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.812 | C=0.187 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.817 | C=0.183 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs11606101 | 0.000529 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 95303746 | 95304096 | E067 | 13225 |
chr11 | 95304191 | 95304231 | E067 | 13670 |
chr11 | 95304328 | 95304396 | E067 | 13807 |
chr11 | 95305159 | 95305210 | E067 | 14638 |
chr11 | 95309174 | 95310091 | E067 | 18653 |
chr11 | 95310138 | 95310212 | E067 | 19617 |
chr11 | 95257698 | 95258226 | E068 | -32295 |
chr11 | 95289254 | 95290498 | E068 | -23 |
chr11 | 95290519 | 95290667 | E068 | 0 |
chr11 | 95297026 | 95297411 | E068 | 6505 |
chr11 | 95297422 | 95297548 | E068 | 6901 |
chr11 | 95297669 | 95297853 | E068 | 7148 |
chr11 | 95298827 | 95299312 | E068 | 8306 |
chr11 | 95299389 | 95299798 | E068 | 8868 |
chr11 | 95303035 | 95303085 | E068 | 12514 |
chr11 | 95303746 | 95304096 | E068 | 13225 |
chr11 | 95305159 | 95305210 | E068 | 14638 |
chr11 | 95305233 | 95305273 | E068 | 14712 |
chr11 | 95297026 | 95297411 | E069 | 6505 |
chr11 | 95297422 | 95297548 | E069 | 6901 |
chr11 | 95297669 | 95297853 | E069 | 7148 |
chr11 | 95298827 | 95299312 | E069 | 8306 |
chr11 | 95299389 | 95299798 | E069 | 8868 |
chr11 | 95303746 | 95304096 | E069 | 13225 |
chr11 | 95304191 | 95304231 | E069 | 13670 |
chr11 | 95304328 | 95304396 | E069 | 13807 |
chr11 | 95325471 | 95326093 | E069 | 34950 |
chr11 | 95326174 | 95326284 | E069 | 35653 |
chr11 | 95340093 | 95340170 | E069 | 49572 |
chr11 | 95298827 | 95299312 | E070 | 8306 |
chr11 | 95299389 | 95299798 | E070 | 8868 |
chr11 | 95289254 | 95290498 | E071 | -23 |
chr11 | 95297026 | 95297411 | E071 | 6505 |
chr11 | 95297422 | 95297548 | E071 | 6901 |
chr11 | 95297669 | 95297853 | E071 | 7148 |
chr11 | 95298827 | 95299312 | E071 | 8306 |
chr11 | 95299389 | 95299798 | E071 | 8868 |
chr11 | 95304191 | 95304231 | E071 | 13670 |
chr11 | 95304328 | 95304396 | E071 | 13807 |
chr11 | 95305159 | 95305210 | E071 | 14638 |
chr11 | 95305233 | 95305273 | E071 | 14712 |
chr11 | 95309174 | 95310091 | E071 | 18653 |
chr11 | 95319513 | 95319857 | E071 | 28992 |
chr11 | 95287091 | 95287816 | E072 | -2705 |
chr11 | 95289254 | 95290498 | E072 | -23 |
chr11 | 95297422 | 95297548 | E072 | 6901 |
chr11 | 95298827 | 95299312 | E072 | 8306 |
chr11 | 95299389 | 95299798 | E072 | 8868 |
chr11 | 95303746 | 95304096 | E072 | 13225 |
chr11 | 95304191 | 95304231 | E072 | 13670 |
chr11 | 95304328 | 95304396 | E072 | 13807 |
chr11 | 95305159 | 95305210 | E072 | 14638 |
chr11 | 95305233 | 95305273 | E072 | 14712 |
chr11 | 95323685 | 95323791 | E072 | 33164 |
chr11 | 95325471 | 95326093 | E072 | 34950 |
chr11 | 95326174 | 95326284 | E072 | 35653 |
chr11 | 95289254 | 95290498 | E073 | -23 |
chr11 | 95310138 | 95310212 | E073 | 19617 |
chr11 | 95325471 | 95326093 | E073 | 34950 |
chr11 | 95305159 | 95305210 | E074 | 14638 |
chr11 | 95309174 | 95310091 | E074 | 18653 |
chr11 | 95310138 | 95310212 | E074 | 19617 |
chr11 | 95319168 | 95319473 | E074 | 28647 |
chr11 | 95319513 | 95319857 | E074 | 28992 |
chr11 | 95289254 | 95290498 | E081 | -23 |
chr11 | 95290519 | 95290667 | E081 | 0 |
chr11 | 95290686 | 95290795 | E081 | 165 |
chr11 | 95298827 | 95299312 | E081 | 8306 |
chr11 | 95299389 | 95299798 | E081 | 8868 |
chr11 | 95304191 | 95304231 | E081 | 13670 |
chr11 | 95304328 | 95304396 | E081 | 13807 |
chr11 | 95289254 | 95290498 | E082 | -23 |