rs11623335

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0142 (4263/29964,GnomAD)
G==0136 (3980/29118,TOPMED)
G==0100 (503/5008,1000G)
G==0189 (727/3854,ALSPAC)
G==0194 (721/3708,TWINSUK)
chr14:56566358 (GRCh38.p7) (14q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
25 Enhancers around
26 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.56566358G>A
GRCh37.p13 chr 14NC_000014.8:g.57033076G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.039A=0.961
1000GenomesAmericanSub694G=0.150A=0.850
1000GenomesEast AsianSub1008G=0.003A=0.997
1000GenomesEuropeSub1006G=0.232A=0.768
1000GenomesGlobalStudy-wide5008G=0.100A=0.900
1000GenomesSouth AsianSub978G=0.120A=0.880
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.189A=0.811
The Genome Aggregation DatabaseAfricanSub8728G=0.050A=0.950
The Genome Aggregation DatabaseAmericanSub838G=0.130A=0.870
The Genome Aggregation DatabaseEast AsianSub1620G=0.002A=0.998
The Genome Aggregation DatabaseEuropeSub18476G=0.195A=0.804
The Genome Aggregation DatabaseGlobalStudy-wide29964G=0.142A=0.857
The Genome Aggregation DatabaseOtherSub302G=0.320A=0.680
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.136A=0.863
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.194A=0.806
PMID Title Author Journal
21956439Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.Zuo LNeuropsychopharmacology

P-Value

SNP ID p-value Traits Study
rs116233353E-07alcohol dependence21956439

eQTL of rs11623335 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11623335 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr145700874057008790E070-24286
chr145700885757008935E070-24141
chr145700989957010036E070-23040
chr145701023357010441E070-22635
chr145704884757048897E07115771
chr145704894357049027E07115867
chr145704906457049417E07115988
chr145704945757049501E07116381
chr145705040957050634E07117333
chr145705250357052590E07119427
chr145705455557054771E07121479
chr145705040957050634E07217333
chr145705081057051032E07217734
chr145705166257051757E07218586
chr145705455557054771E07221479
chr145704884757048897E07315771
chr145704894357049027E07315867
chr145704906457049417E07315988
chr145704884757048897E07415771
chr145704894357049027E07415867
chr145704906457049417E07415988
chr145704945757049501E07416381
chr145705040957050634E07417333
chr145704906457049417E08215988
chr145704945757049501E08216381






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr145704576657045948E06712690
chr145704598257047190E06712906
chr145704721157047528E06714135
chr145704562857045711E06812552
chr145704576657045948E06812690
chr145704598257047190E06812906
chr145704721157047528E06814135
chr145704598257047190E06912906
chr145704721157047528E06914135
chr145704598257047190E07012906
chr145704721157047528E07014135
chr145704576657045948E07112690
chr145704598257047190E07112906
chr145704721157047528E07114135
chr145704562857045711E07212552
chr145704576657045948E07212690
chr145704598257047190E07212906
chr145704721157047528E07214135
chr145704598257047190E07312906
chr145704721157047528E07314135
chr145704598257047190E07412906
chr145704721157047528E07414135
chr145704598257047190E08112906
chr145704721157047528E08114135
chr145704598257047190E08212906
chr145704721157047528E08214135