SNP Detail Info-rs11638410

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0327 (9812/29930,GnomAD)
A=0306 (8928/29118,TOPMED)
A=0259 (1299/5008,1000G)
A=0343 (1320/3854,ALSPAC)
A=0325 (1206/3708,TWINSUK)

Position: chr15:79522801 (GRCh38.p7) (15q25.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 10 Enhancers around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.79522801G>A
GRCh37.p13 chr 15	NC_000015.9:g.79815143G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.686	A=0.314
1000Genomes	American	Sub	694	G=0.660	A=0.340
1000Genomes	East Asian	Sub	1008	G=0.897	A=0.103
1000Genomes	Europe	Sub	1006	G=0.662	A=0.338
1000Genomes	Global	Study-wide	5008	G=0.741	A=0.259
1000Genomes	South Asian	Sub	978	G=0.790	A=0.210
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.657	A=0.343
The Genome Aggregation Database	African	Sub	8704	G=0.690	A=0.310
The Genome Aggregation Database	American	Sub	836	G=0.720	A=0.280
The Genome Aggregation Database	East Asian	Sub	1622	G=0.883	A=0.117
The Genome Aggregation Database	Europe	Sub	18466	G=0.642	A=0.357
The Genome Aggregation Database	Global	Study-wide	29930	G=0.672	A=0.327
The Genome Aggregation Database	Other	Sub	302	G=0.710	A=0.290
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.693	A=0.306
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.675	A=0.325

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11638410	0.000344	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	79805806	79806045	E070	-9098
chr15	79806170	79806224	E070	-8919
chr15	79806428	79806536	E070	-8607
chr15	79805338	79805712	E081	-9431
chr15	79805806	79806045	E081	-9098
chr15	79806170	79806224	E081	-8919
chr15	79806428	79806536	E081	-8607
chr15	79805806	79806045	E082	-9098
chr15	79806170	79806224	E082	-8919
chr15	79806428	79806536	E082	-8607

rs11638410