rs11641255

Homo sapiens
C>A / C>G
CDH13 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0455 (13566/29784,GnomAD)
G=0424 (12365/29118,TOPMED)
G=0452 (2264/5008,1000G)
C==0495 (1909/3854,ALSPAC)
C==0477 (1767/3708,TWINSUK)
chr16:83123538 (GRCh38.p7) (16q23.3)
AD
GWASdb2
1   publication(s)
See rs on genome
6 Enhancers around
6 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.83123538C>A
GRCh38.p7 chr 16NC_000016.10:g.83123538C>G
GRCh37.p13 chr 16NC_000016.9:g.83157143C>A
GRCh37.p13 chr 16NC_000016.9:g.83157143C>G

Gene: CDH13, cadherin 13(plus strand)

Molecule type Change Amino acid[Codon] SO Term
CDH13 transcript variant 2NM_001220488.1:c.N/AIntron Variant
CDH13 transcript variant 3NM_001220489.1:c.N/AIntron Variant
CDH13 transcript variant 4NM_001220490.1:c.N/AIntron Variant
CDH13 transcript variant 5NM_001220491.1:c.N/AIntron Variant
CDH13 transcript variant 6NM_001220492.1:c.N/AIntron Variant
CDH13 transcript variant 1NM_001257.4:c.N/AIntron Variant
CDH13 transcript variant X1XM_011522804.2:c.N/AIntron Variant
CDH13 transcript variant X2XM_017022848.1:c.N/AIntron Variant
CDH13 transcript variant X3XM_017022849.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.664G=0.336
1000GenomesAmericanSub694C=0.440G=0.560
1000GenomesEast AsianSub1008C=0.570G=0.430
1000GenomesEuropeSub1006C=0.480G=0.520
1000GenomesGlobalStudy-wide5008C=0.548G=0.452
1000GenomesSouth AsianSub978C=0.510G=0.490
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.495G=0.505
The Genome Aggregation DatabaseAfricanSub8692C=0.667A=0.000
The Genome Aggregation DatabaseAmericanSub826C=0.380A=0.00,
The Genome Aggregation DatabaseEast AsianSub1604C=0.554A=0.000
The Genome Aggregation DatabaseEuropeSub18360C=0.490A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29784C=0.544A=0.000
The Genome Aggregation DatabaseOtherSub302C=0.680A=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.575G=0.424
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.477G=0.523
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs116412554.82E-05alcohol consumption23743675

eQTL of rs11641255 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11641255 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr168460784774E06837435
chr167306773166E07125895
chr167319673246E07126024
chr168579685856E07138624
chr168430984529E07437137
chr168460784774E07437435



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr166000660628E06712834
chr166000660628E06812834
chr166000660628E06912834
chr166000660628E07212834
chr166000660628E07312834
chr166000660628E07412834