SNP Detail Info-rs11648147

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0265 (7961/29944,GnomAD)
G=0245 (7145/29118,TOPMED)
G=0232 (1161/5008,1000G)
G=0355 (1367/3854,ALSPAC)
G=0352 (1305/3708,TWINSUK)

Position: chr16:86125764 (GRCh38.p7) (16q24.1)

Phenotype: CD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 16	NC_000016.10:g.86125764A>G
GRCh37.p13 chr 16	NC_000016.9:g.86159370A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.922	G=0.078
1000Genomes	American	Sub	694	A=0.780	G=0.220
1000Genomes	East Asian	Sub	1008	A=0.758	G=0.242
1000Genomes	Europe	Sub	1006	A=0.671	G=0.329
1000Genomes	Global	Study-wide	5008	A=0.768	G=0.232
1000Genomes	South Asian	Sub	978	A=0.660	G=0.340
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.645	G=0.355
The Genome Aggregation Database	African	Sub	8716	A=0.893	G=0.107
The Genome Aggregation Database	American	Sub	836	A=0.780	G=0.220
The Genome Aggregation Database	East Asian	Sub	1612	A=0.751	G=0.249
The Genome Aggregation Database	Europe	Sub	18478	A=0.658	G=0.342
The Genome Aggregation Database	Global	Study-wide	29944	A=0.734	G=0.265
The Genome Aggregation Database	Other	Sub	302	A=0.600	G=0.400
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.754	G=0.245
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.648	G=0.352

PMID	Title	Author	Journal
23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Gelernter J	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs11648147	1.65E-05	cocaine dependence	23958962

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr16	86134964	86135360	E081	-24010
chr16	86135465	86135733	E081	-23637

rs11648147