rs11655295

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0162 (4848/29912,GnomAD)
T=0158 (4621/29118,TOPMED)
T=0203 (1017/5008,1000G)
chr17:2530730 (GRCh38.p7) (17p13.3)
ND
GWASdb2
1   publication(s)
See rs on genome
119 Enhancers around
26 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.2530730G>T
GRCh37.p13 chr 17NC_000017.10:g.2434024G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.802T=0.198
1000GenomesAmericanSub694G=0.800T=0.200
1000GenomesEast AsianSub1008G=0.801T=0.199
1000GenomesEuropeSub1006G=0.849T=0.151
1000GenomesGlobalStudy-wide5008G=0.797T=0.203
1000GenomesSouth AsianSub978G=0.730T=0.270
The Genome Aggregation DatabaseAfricanSub8718G=0.804T=0.196
The Genome Aggregation DatabaseAmericanSub836G=0.810T=0.190
The Genome Aggregation DatabaseEast AsianSub1610G=0.791T=0.209
The Genome Aggregation DatabaseEuropeSub18448G=0.858T=0.141
The Genome Aggregation DatabaseGlobalStudy-wide29912G=0.837T=0.162
The Genome Aggregation DatabaseOtherSub300G=0.910T=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.841T=0.158
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs116552954.19E-05alcohol and nictotine co-dependence20158304

eQTL of rs11655295 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11655295 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1723853172385928E067-48096
chr1723886992389574E067-44450
chr1723934292393469E067-40555
chr1723935972393712E067-40312
chr1723939612394115E067-39909
chr1723941542394823E067-39201
chr1723948762394938E067-39086
chr1724410292441092E0677005
chr1724413512441687E0677327
chr1724422922442354E0678268
chr1724454972445783E06711473
chr1724457972446040E06711773
chr1723853172385928E068-48096
chr1723880402388697E068-45327
chr1723886992389574E068-44450
chr1723904822390837E068-43187
chr1723908492390936E068-43088
chr1723924882392916E068-41108
chr1723930432393093E068-40931
chr1723931612393252E068-40772
chr1723932982393348E068-40676
chr1723934292393469E068-40555
chr1723935972393712E068-40312
chr1723939612394115E068-39909
chr1723941542394823E068-39201
chr1723948762394938E068-39086
chr1724119022412069E068-21955
chr1724413512441687E0687327
chr1724418312441890E0687807
chr1724422922442354E0688268
chr1724423722442426E0688348
chr1724833512483702E06849327
chr1723853172385928E069-48096
chr1723886992389574E069-44450
chr1723904822390837E069-43187
chr1723931612393252E069-40772
chr1723932982393348E069-40676
chr1723934292393469E069-40555
chr1723935972393712E069-40312
chr1723939612394115E069-39909
chr1723948762394938E069-39086
chr1724114792411811E069-22213
chr1724118432411897E069-22127
chr1724119022412069E069-21955
chr1724126862412736E069-21288
chr1724457972446040E06911773
chr1724509372451055E06916913
chr1724511082451158E06917084
chr1724663082467140E06932284
chr1723853172385928E071-48096
chr1723880402388697E071-45327
chr1723886992389574E071-44450
chr1723899772390027E071-43997
chr1723930432393093E071-40931
chr1723931612393252E071-40772
chr1723932982393348E071-40676
chr1723934292393469E071-40555
chr1723935972393712E071-40312
chr1723939612394115E071-39909
chr1723941542394823E071-39201
chr1723948762394938E071-39086
chr1724118432411897E071-22127
chr1724119022412069E071-21955
chr1724126862412736E071-21288
chr1724273452427464E071-6560
chr1724281272428177E071-5847
chr1724457972446040E07111773
chr1724505652450780E07116541
chr1723853172385928E072-48096
chr1723875732387904E072-46120
chr1723880402388697E072-45327
chr1723886992389574E072-44450
chr1723924882392916E072-41108
chr1723930432393093E072-40931
chr1723931612393252E072-40772
chr1723932982393348E072-40676
chr1723934292393469E072-40555
chr1723935972393712E072-40312
chr1723939612394115E072-39909
chr1723948762394938E072-39086
chr1724454972445783E07211473
chr1724457972446040E07211773
chr1724460592446111E07212035
chr1724505652450780E07216541
chr1724509372451055E07216913
chr1724511082451158E07217084
chr1724512782451362E07217254
chr1723853172385928E073-48096
chr1723941542394823E073-39201
chr1724457972446040E07311773
chr1724460592446111E07312035
chr1724833512483702E07349327
chr1723853172385928E074-48096
chr1723886992389574E074-44450
chr1723899772390027E074-43997
chr1723924882392916E074-41108
chr1723930432393093E074-40931
chr1723931612393252E074-40772
chr1723932982393348E074-40676
chr1723934292393469E074-40555
chr1723935972393712E074-40312
chr1723939612394115E074-39909
chr1723948762394938E074-39086
chr1724114792411811E074-22213
chr1724118432411897E074-22127
chr1724119022412069E074-21955
chr1724447292444878E07410705
chr1724449452445035E07410921
chr1724454972445783E07411473
chr1724457972446040E07411773
chr1724460592446111E07412035
chr1724505652450780E07416541
chr1724509372451055E07416913
chr1724511082451158E07417084
chr1724663082467140E07432284
chr1724833512483702E07449327
chr1724837962483890E07449772
chr1724126862412736E081-21288
chr1724119022412069E082-21955









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1724141432414221E067-19803
chr1724142432415649E067-18375
chr1724159202416323E067-17701
chr1724141432414221E068-19803
chr1724142432415649E068-18375
chr1724159202416323E068-17701
chr1724141432414221E069-19803
chr1724142432415649E069-18375
chr1724159202416323E069-17701
chr1724141432414221E070-19803
chr1724142432415649E070-18375
chr1724141432414221E071-19803
chr1724142432415649E071-18375
chr1724159202416323E071-17701
chr1724141432414221E072-19803
chr1724142432415649E072-18375
chr1724159202416323E072-17701
chr1724141432414221E073-19803
chr1724142432415649E073-18375
chr1724159202416323E073-17701
chr1724141432414221E074-19803
chr1724142432415649E074-18375
chr1724141432414221E081-19803
chr1724141432414221E082-19803
chr1724142432415649E082-18375
chr1724159202416323E082-17701