SNP Detail Info-rs11691730

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0209 (6274/29890,GnomAD)
A=0254 (7403/29116,TOPMED)
A=0270 (1354/5008,1000G)
A=0143 (550/3854,ALSPAC)
A=0128 (474/3708,TWINSUK)

Position: chr2:102944668 (GRCh38.p7) (2q12.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 20 Enhancers around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.102944668G>A
GRCh37.p13 chr 2	NC_000002.11:g.103561126G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.601	A=0.399
1000Genomes	American	Sub	694	G=0.790	A=0.210
1000Genomes	East Asian	Sub	1008	G=0.711	A=0.289
1000Genomes	Europe	Sub	1006	G=0.843	A=0.157
1000Genomes	Global	Study-wide	5008	G=0.730	A=0.270
1000Genomes	South Asian	Sub	978	G=0.760	A=0.240
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.857	A=0.143
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.745	A=0.254
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.872	A=0.128

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs11691730	4.65E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	103592344	103593549	E068	31218
chr2	103593710	103594123	E068	32584
chr2	103596138	103596188	E069	35012
chr2	103592344	103593549	E070	31218
chr2	103593710	103594123	E070	32584
chr2	103595206	103595439	E071	34080
chr2	103596138	103596188	E071	35012
chr2	103596138	103596188	E072	35012
chr2	103596138	103596188	E074	35012
chr2	103548964	103549294	E081	-11832
chr2	103590416	103590470	E081	29290
chr2	103590754	103590992	E081	29628
chr2	103592344	103593549	E081	31218
chr2	103594485	103594929	E081	33359
chr2	103596138	103596188	E081	35012
chr2	103590416	103590470	E082	29290
chr2	103590754	103590992	E082	29628
chr2	103592344	103593549	E082	31218
chr2	103593710	103594123	E082	32584
chr2	103609782	103609863	E082	48656

rs11691730