rs11717973
Homo sapiens
C>T
ITGA9 : Intron Variant
SNV (Single Nucleotide Variation)
T=0469 (14039/29902,GnomAD)
T=0448 (13070/29118,TOPMED)
C==0478 (2396/5008,1000G)
C==0495 (1906/3854,ALSPAC)
C==0492 (1825/3708,TWINSUK)
T=0448 (13070/29118,TOPMED)
C==0478 (2396/5008,1000G)
C==0495 (1906/3854,ALSPAC)
C==0492 (1825/3708,TWINSUK)
chr3:37720523 (GRCh38.p7) (3p22.2)
ND
GWASdb2
Genomic Coordinates
| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.37720523C>T |
| GRCh37.p13 chr 3 | NC_000003.11:g.37762014C>T |
| ITGA9 RefSeqGene | NG_016166.1:g.273202C>T |
Gene: ITGA9, integrin subunit alpha 9(plus strand)
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| ITGA9 transcript | NM_002207.2:c. | N/A | Intron Variant |
Genomic View
Chromatin Interaction
Enhancer Annotation (GRCh37.p13)
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 37735124 | 37736312 | E067 | -25702 |
| chr3 | 37736416 | 37736535 | E067 | -25479 |
| chr3 | 37783231 | 37783432 | E067 | 21217 |
| chr3 | 37731361 | 37731509 | E068 | -30505 |
| chr3 | 37754498 | 37754615 | E068 | -7399 |
| chr3 | 37754633 | 37755280 | E068 | -6734 |
| chr3 | 37804709 | 37805445 | E068 | 42695 |
| chr3 | 37735124 | 37736312 | E069 | -25702 |
| chr3 | 37736416 | 37736535 | E069 | -25479 |
| chr3 | 37754006 | 37754289 | E069 | -7725 |
| chr3 | 37754498 | 37754615 | E069 | -7399 |
| chr3 | 37754633 | 37755280 | E069 | -6734 |
| chr3 | 37755282 | 37755369 | E069 | -6645 |
| chr3 | 37804709 | 37805445 | E069 | 42695 |
| chr3 | 37805494 | 37805619 | E069 | 43480 |
| chr3 | 37745095 | 37745448 | E070 | -16566 |
| chr3 | 37745528 | 37745690 | E070 | -16324 |
| chr3 | 37721699 | 37722589 | E071 | -39425 |
| chr3 | 37735124 | 37736312 | E071 | -25702 |
| chr3 | 37736416 | 37736535 | E071 | -25479 |
| chr3 | 37754633 | 37755280 | E071 | -6734 |
| chr3 | 37755282 | 37755369 | E071 | -6645 |
| chr3 | 37755474 | 37755527 | E071 | -6487 |
| chr3 | 37783231 | 37783432 | E071 | 21217 |
| chr3 | 37804709 | 37805445 | E071 | 42695 |
| chr3 | 37805494 | 37805619 | E071 | 43480 |
| chr3 | 37735124 | 37736312 | E072 | -25702 |
| chr3 | 37736416 | 37736535 | E072 | -25479 |
| chr3 | 37736747 | 37736942 | E072 | -25072 |
| chr3 | 37755474 | 37755527 | E072 | -6487 |
| chr3 | 37804709 | 37805445 | E072 | 42695 |
| chr3 | 37805494 | 37805619 | E072 | 43480 |
| chr3 | 37754498 | 37754615 | E073 | -7399 |
| chr3 | 37754633 | 37755280 | E073 | -6734 |
| chr3 | 37755282 | 37755369 | E073 | -6645 |
| chr3 | 37804709 | 37805445 | E073 | 42695 |
| chr3 | 37805494 | 37805619 | E073 | 43480 |
| chr3 | 37735124 | 37736312 | E074 | -25702 |
| chr3 | 37736416 | 37736535 | E074 | -25479 |
| chr3 | 37754498 | 37754615 | E074 | -7399 |
| chr3 | 37754633 | 37755280 | E074 | -6734 |
| chr3 | 37755282 | 37755369 | E074 | -6645 |
| chr3 | 37755474 | 37755527 | E074 | -6487 |
| chr3 | 37804709 | 37805445 | E074 | 42695 |
| chr3 | 37805494 | 37805619 | E074 | 43480 |
| chr3 | 37730751 | 37730857 | E081 | -31157 |
| chr3 | 37735124 | 37736312 | E081 | -25702 |
| chr3 | 37754633 | 37755280 | E081 | -6734 |