SNP Detail Info-rs11744308

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.107974502A>T
GRCh37.p13 chr 5	NC_000005.9:g.107310203A>T

Molecule type	Change	Amino acid[Codon]	SO Term
FBXL17 transcript	NM_001163315.2:c.	N/A	Intron Variant
FBXL17 transcript variant X1	XM_005272048.4:c.	N/A	Intron Variant
FBXL17 transcript variant X2	XM_011543574.2:c.	N/A	Intron Variant
FBXL17 transcript variant X3	XM_011543575.2:c.	N/A	Intron Variant
FBXL17 transcript variant X11	XM_005272050.4:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X4	XM_011543576.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X5	XM_011543577.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X6	XM_011543578.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X8	XM_011543579.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X9	XM_011543580.2:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X7	XM_017009729.1:c.	N/A	Genic Downstream Transcript Variant
FBXL17 transcript variant X10	XR_427717.3:n.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.714	T=0.286
1000Genomes	American	Sub	694	A=0.770	T=0.230
1000Genomes	East Asian	Sub	1008	A=0.611	T=0.389
1000Genomes	Europe	Sub	1006	A=0.716	T=0.284
1000Genomes	Global	Study-wide	5008	A=0.685	T=0.315
1000Genomes	South Asian	Sub	978	A=0.630	T=0.370
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.710	T=0.290
The Genome Aggregation Database	African	Sub	8692	A=0.726	T=0.274
The Genome Aggregation Database	American	Sub	830	A=0.760	T=0.240
The Genome Aggregation Database	East Asian	Sub	1600	A=0.607	T=0.393
The Genome Aggregation Database	Europe	Sub	18440	A=0.689	T=0.310
The Genome Aggregation Database	Global	Study-wide	29864	A=0.697	T=0.302
The Genome Aggregation Database	Other	Sub	302	A=0.660	T=0.340
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.721	T=0.278
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.715	T=0.285

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs11744308	0.000669	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	107272285	107272380	E068	-37823
chr5	107272929	107273341	E068	-36862
chr5	107273369	107273630	E068	-36573
chr5	107272929	107273341	E070	-36862
chr5	107273369	107273630	E070	-36573
chr5	107273643	107274145	E070	-36058
chr5	107273369	107273630	E074	-36573
chr5	107271421	107271593	E081	-38610
chr5	107272929	107273341	E081	-36862
chr5	107273369	107273630	E081	-36573
chr5	107305645	107305962	E081	-4241
chr5	107333136	107333277	E081	22933
chr5	107333333	107333543	E081	23130
chr5	107333573	107333750	E081	23370
chr5	107341603	107341647	E081	31400
chr5	107271421	107271593	E082	-38610
chr5	107272929	107273341	E082	-36862
chr5	107273369	107273630	E082	-36573
chr5	107273643	107274145	E082	-36058
chr5	107333136	107333277	E082	22933
chr5	107333333	107333543	E082	23130
chr5	107333573	107333750	E082	23370
chr5	107341603	107341647	E082	31400
chr5	107342540	107343200	E082	32337

rs11744308