SNP Detail Info-rs11747943

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0171 (5133/29920,GnomAD)
A==0183 (5332/29118,TOPMED)
A==0285 (1429/5008,1000G)
A==0066 (255/3854,ALSPAC)
A==0064 (239/3708,TWINSUK)

Position: chr5:28696483 (GRCh38.p7) (5p14.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.28696483A>G
GRCh37.p13 chr 5	NC_000005.9:g.28696590A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.318	G=0.682
1000Genomes	American	Sub	694	A=0.180	G=0.820
1000Genomes	East Asian	Sub	1008	A=0.649	G=0.351
1000Genomes	Europe	Sub	1006	A=0.071	G=0.929
1000Genomes	Global	Study-wide	5008	A=0.285	G=0.715
1000Genomes	South Asian	Sub	978	A=0.160	G=0.840
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.066	G=0.934
The Genome Aggregation Database	African	Sub	8708	A=0.308	G=0.692
The Genome Aggregation Database	American	Sub	834	A=0.150	G=0.850
The Genome Aggregation Database	East Asian	Sub	1606	A=0.594	G=0.406
The Genome Aggregation Database	Europe	Sub	18470	A=0.073	G=0.926
The Genome Aggregation Database	Global	Study-wide	29920	A=0.171	G=0.828
The Genome Aggregation Database	Other	Sub	302	A=0.050	G=0.950
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.183	G=0.816
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.064	G=0.936

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs11747943	9.1E-06	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11747943