SNP Detail Info-rs11752804

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0068 (2052/29964,GnomAD)
A=0056 (1643/29118,TOPMED)
A=0043 (215/5008,1000G)
A=0112 (432/3854,ALSPAC)
A=0102 (379/3708,TWINSUK)

Position: chr6:85318963 (GRCh38.p7) (6q14.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.85318963G>A
GRCh37.p13 chr 6	NC_000006.11:g.86028681G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.988	A=0.012
1000Genomes	American	Sub	694	G=0.970	A=0.030
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=0.891	A=0.109
1000Genomes	Global	Study-wide	5008	G=0.957	A=0.043
1000Genomes	South Asian	Sub	978	G=0.930	A=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.888	A=0.112
The Genome Aggregation Database	African	Sub	8726	G=0.979	A=0.021
The Genome Aggregation Database	American	Sub	838	G=0.950	A=0.050
The Genome Aggregation Database	East Asian	Sub	1622	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18476	G=0.902	A=0.097
The Genome Aggregation Database	Global	Study-wide	29964	G=0.931	A=0.068
The Genome Aggregation Database	Other	Sub	302	G=0.890	A=0.110
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.943	A=0.056
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.898	A=0.102

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11752804	0.000013	alcoholism	pha002892
rs11752804	0.000013	alcohol dependence	20201924
rs11752804	0.00031	alcohol dependence(Early Onset)	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	85992938	85993521	E081	-35160
chr6	85993758	85993812	E081	-34869

rs11752804