rs11768102

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0213 (6398/29966,GnomAD)
T=0231 (6734/29118,TOPMED)
T=0152 (761/5008,1000G)
T=0231 (889/3854,ALSPAC)
T=0237 (878/3708,TWINSUK)
chr7:3053663 (GRCh38.p7) (7p22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.3053663C>T
GRCh37.p13 chr 7NC_000007.13:g.3093297C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.786T=0.214
1000GenomesAmericanSub694C=0.800T=0.200
1000GenomesEast AsianSub1008C=0.981T=0.019
1000GenomesEuropeSub1006C=0.787T=0.213
1000GenomesGlobalStudy-wide5008C=0.848T=0.152
1000GenomesSouth AsianSub978C=0.890T=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.769T=0.231
The Genome Aggregation DatabaseAfricanSub8720C=0.789T=0.211
The Genome Aggregation DatabaseAmericanSub838C=0.770T=0.230
The Genome Aggregation DatabaseEast AsianSub1622C=0.975T=0.025
The Genome Aggregation DatabaseEuropeSub18484C=0.769T=0.230
The Genome Aggregation DatabaseGlobalStudy-wide29966C=0.786T=0.213
The Genome Aggregation DatabaseOtherSub302C=0.790T=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.768T=0.231
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.763T=0.237
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs117681020.00059alcohol dependence20201924

eQTL of rs11768102 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11768102 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr730676533068113E070-25184
chr730682373068513E070-24784
chr730781153078261E070-15036
chr730783213078439E070-14858
chr730785143078598E070-14699
chr730666633066946E081-26351
chr730670093067401E081-25896
chr730682373068513E081-24784
chr730686123068761E081-24536
chr730689423069047E081-24250
chr730935313093598E081234
chr731230463123217E08129749
chr731237463123816E08130449