| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 8 | NC_000008.11:g.89588871A>G |
| GRCh37.p13 chr 8 | NC_000008.10:g.90601100A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.976 | G=0.024 |
| 1000Genomes | American | Sub | 694 | A=0.870 | G=0.130 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.945 | G=0.055 |
| 1000Genomes | Europe | Sub | 1006 | A=0.730 | G=0.270 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.886 | G=0.114 |
| 1000Genomes | South Asian | Sub | 978 | A=0.880 | G=0.120 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.715 | G=0.285 |
| The Genome Aggregation Database | African | Sub | 8724 | A=0.947 | G=0.053 |
| The Genome Aggregation Database | American | Sub | 834 | A=0.880 | G=0.120 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.949 | G=0.051 |
| The Genome Aggregation Database | Europe | Sub | 18424 | A=0.718 | G=0.281 |
| The Genome Aggregation Database | Global | Study-wide | 29900 | A=0.802 | G=0.197 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.740 | G=0.260 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.838 | G=0.161 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.723 | G=0.277 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 19581569 | Genome-wide association study of alcohol dependence. | Treutlein J | Arch Gen Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs11780016 | 6.09E-05 | alcohol dependence | 19581569 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr8 | 90630613 | 90630782 | E069 | 29513 |
| chr8 | 90630821 | 90631118 | E069 | 29721 |
| chr8 | 90643336 | 90643445 | E070 | 42236 |
| chr8 | 90643472 | 90643586 | E070 | 42372 |
| chr8 | 90630613 | 90630782 | E073 | 29513 |
| chr8 | 90630821 | 90631118 | E073 | 29721 |
| chr8 | 90636635 | 90636778 | E081 | 35535 |
| chr8 | 90636944 | 90637199 | E081 | 35844 |
| chr8 | 90630613 | 90630782 | E082 | 29513 |
| chr8 | 90630821 | 90631118 | E082 | 29721 |