rs11807036

Homo sapiens
A>G
LOC105378753 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0057 (1707/29972,GnomAD)
G=0082 (2409/29118,TOPMED)
G=0056 (279/5008,1000G)
chr1:58982247 (GRCh38.p7) (1p32.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.58982247A>G
GRCh37.p13 chr 1NC_000001.10:g.59447919A>G

Gene: LOC105378753, uncharacterized LOC105378753(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105378753 transcript variant X2XR_947412.2:n.N/AIntron Variant
LOC105378753 transcript variant X6XR_001738077.1:n.N/AGenic Upstream Transcript Variant
LOC105378753 transcript variant X7XR_001738078.1:n.N/AGenic Upstream Transcript Variant
LOC105378753 transcript variant X1XR_947408.2:n.N/AGenic Upstream Transcript Variant
LOC105378753 transcript variant X3XR_947409.2:n.N/AGenic Upstream Transcript Variant
LOC105378753 transcript variant X7XR_947410.2:n.N/AGenic Upstream Transcript Variant
LOC105378753 transcript variant X5XR_947411.2:n.N/AGenic Upstream Transcript Variant
LOC105378753 transcript variant X6XR_947413.2:n.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.796G=0.204
1000GenomesAmericanSub694A=0.990G=0.010
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=0.999G=0.001
1000GenomesGlobalStudy-wide5008A=0.944G=0.056
1000GenomesSouth AsianSub978A=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8708A=0.806G=0.194
The Genome Aggregation DatabaseAmericanSub838A=0.980G=0.020
The Genome Aggregation DatabaseEast AsianSub1618A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18506A=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29972A=0.943G=0.057
The Genome Aggregation DatabaseOtherSub302A=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.917G=0.082
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs118070360.00096alcohol dependence20201924

eQTL of rs11807036 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11807036 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr15943394059434706E068-13213
chr15946343859463584E06815519
chr15947888759480045E06830968
chr15948527659485326E06837357
chr15948536559485640E06837446
chr15943394059434706E071-13213
chr15943394059434706E072-13213
chr15943367059433742E073-14177
chr15943394059434706E073-13213
chr15947286459472914E07324945
chr15947858559478647E07330666
chr15943394059434706E074-13213
chr15947858559478647E07430666
chr15943394059434706E081-13213