SNP Detail Info-rs11807036

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC105378753 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0057 (1707/29972,GnomAD)
G=0082 (2409/29118,TOPMED)
G=0056 (279/5008,1000G)

Position: chr1:58982247 (GRCh38.p7) (1p32.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 14 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.58982247A>G
GRCh37.p13 chr 1	NC_000001.10:g.59447919A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105378753 transcript variant X2	XR_947412.2:n.	N/A	Intron Variant
LOC105378753 transcript variant X6	XR_001738077.1:n.	N/A	Genic Upstream Transcript Variant
LOC105378753 transcript variant X7	XR_001738078.1:n.	N/A	Genic Upstream Transcript Variant
LOC105378753 transcript variant X1	XR_947408.2:n.	N/A	Genic Upstream Transcript Variant
LOC105378753 transcript variant X3	XR_947409.2:n.	N/A	Genic Upstream Transcript Variant
LOC105378753 transcript variant X7	XR_947410.2:n.	N/A	Genic Upstream Transcript Variant
LOC105378753 transcript variant X5	XR_947411.2:n.	N/A	Genic Upstream Transcript Variant
LOC105378753 transcript variant X6	XR_947413.2:n.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.796	G=0.204
1000Genomes	American	Sub	694	A=0.990	G=0.010
1000Genomes	East Asian	Sub	1008	A=1.000	G=0.000
1000Genomes	Europe	Sub	1006	A=0.999	G=0.001
1000Genomes	Global	Study-wide	5008	A=0.944	G=0.056
1000Genomes	South Asian	Sub	978	A=1.000	G=0.000
The Genome Aggregation Database	African	Sub	8708	A=0.806	G=0.194
The Genome Aggregation Database	American	Sub	838	A=0.980	G=0.020
The Genome Aggregation Database	East Asian	Sub	1618	A=1.000	G=0.000
The Genome Aggregation Database	Europe	Sub	18506	A=0.999	G=0.000
The Genome Aggregation Database	Global	Study-wide	29972	A=0.943	G=0.057
The Genome Aggregation Database	Other	Sub	302	A=1.000	G=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.917	G=0.082

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11807036	0.00096	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	59433940	59434706	E068	-13213
chr1	59463438	59463584	E068	15519
chr1	59478887	59480045	E068	30968
chr1	59485276	59485326	E068	37357
chr1	59485365	59485640	E068	37446
chr1	59433940	59434706	E071	-13213
chr1	59433940	59434706	E072	-13213
chr1	59433670	59433742	E073	-14177
chr1	59433940	59434706	E073	-13213
chr1	59472864	59472914	E073	24945
chr1	59478585	59478647	E073	30666
chr1	59433940	59434706	E074	-13213
chr1	59478585	59478647	E074	30666
chr1	59433940	59434706	E081	-13213

rs11807036