rs11825833

Homo sapiens
T>C
NELL1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0016 (491/29976,GnomAD)
C=0023 (673/29118,TOPMED)
C=0018 (91/5008,1000G)
chr11:20831700 (GRCh38.p7) (11p15.1)
AD
GWASdb2
1   publication(s)
See rs on genome
14 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.20831700T>C
GRCh37.p13 chr 11NC_000011.9:g.20853246T>C

Gene: NELL1, neural EGFL like 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
NELL1 transcript variant 3NM_001288713.1:c.N/AIntron Variant
NELL1 transcript variant 4NM_001288714.1:c.N/AIntron Variant
NELL1 transcript variant 1NM_006157.4:c.N/AIntron Variant
NELL1 transcript variant 2NM_201551.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.935C=0.065
1000GenomesAmericanSub694T=0.990C=0.010
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=1.000C=0.000
1000GenomesGlobalStudy-wide5008T=0.982C=0.018
1000GenomesSouth AsianSub978T=1.000C=0.000
The Genome Aggregation DatabaseAfricanSub8718T=0.944C=0.056
The Genome Aggregation DatabaseAmericanSub838T=1.000C=0.000
The Genome Aggregation DatabaseEast AsianSub1614T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18504T=1.000C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29976T=0.983C=0.016
The Genome Aggregation DatabaseOtherSub302T=1.000C=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.976C=0.023
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs118258330.0008alcohol dependence21314694

eQTL of rs11825833 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11825833 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr112084360620843646E068-9600
chr112084374920843799E068-9447
chr112080443820804488E070-48758
chr112080451120804669E070-48577
chr112080485620805051E070-48195
chr112080525520805332E070-47914
chr112086082820860941E0707582
chr112080451120804669E081-48577
chr112080485620805051E081-48195
chr112080525520805332E081-47914
chr112080443820804488E082-48758
chr112080451120804669E082-48577
chr112080485620805051E082-48195
chr112080525520805332E082-47914