SNP Detail Info-rs11835196

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

LOC107987435 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0154 (4636/29946,GnomAD)
T=0168 (4893/29118,TOPMED)
T=0129 (645/5008,1000G)
T=0177 (683/3854,ALSPAC)
T=0178 (660/3708,TWINSUK)

Position: chr12:11258992 (GRCh38.p7) (12p13.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.876	T=0.124
1000Genomes	American	Sub	694	C=0.870	T=0.130
1000Genomes	East Asian	Sub	1008	C=0.937	T=0.063
1000Genomes	Europe	Sub	1006	C=0.836	T=0.164
1000Genomes	Global	Study-wide	5008	C=0.871	T=0.129
1000Genomes	South Asian	Sub	978	C=0.840	T=0.160
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.823	T=0.177
The Genome Aggregation Database	African	Sub	8714	C=0.862	T=0.138
The Genome Aggregation Database	American	Sub	836	C=0.810	T=0.190
The Genome Aggregation Database	East Asian	Sub	1620	C=0.943	T=0.057
The Genome Aggregation Database	Europe	Sub	18474	C=0.830	T=0.169
The Genome Aggregation Database	Global	Study-wide	29946	C=0.845	T=0.154
The Genome Aggregation Database	Other	Sub	302	C=0.840	T=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.832	T=0.168
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.822	T=0.178

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11835196	0.000899	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11835196