rs11858797

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0007 (232/29984,GnomAD)
C=0011 (342/29118,TOPMED)
C=0013 (67/5008,1000G)
chr15:85922484 (GRCh38.p7) (15q25.3)
AD
GWASdb2
1   publication(s)
See rs on genome
47 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.85922484T>C
GRCh37.p13 chr 15NC_000015.9:g.86465715T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.952C=0.048
1000GenomesAmericanSub694T=1.000C=0.000
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=0.999C=0.001
1000GenomesGlobalStudy-wide5008T=0.987C=0.013
1000GenomesSouth AsianSub978T=1.000C=0.000
The Genome Aggregation DatabaseAfricanSub8724T=0.974C=0.026
The Genome Aggregation DatabaseAmericanSub838T=1.000C=0.000
The Genome Aggregation DatabaseEast AsianSub1622T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18498T=0.999C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29984T=0.992C=0.007
The Genome Aggregation DatabaseOtherSub302T=1.000C=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.988C=0.011
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs118587970.000874alcohol dependence20201924

eQTL of rs11858797 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11858797 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr158644882486449438E068-16277
chr158644882486449438E069-16277
chr158644945286449585E069-16130
chr158642802386428083E070-37632
chr158643011286430245E070-35470
chr158643301486433096E070-32619
chr158643319786433377E070-32338
chr158643346286434135E070-31580
chr158643423486434335E070-31380
chr158643434986434448E070-31267
chr158644080586441449E070-24266
chr158642947186430089E071-35626
chr158644945286449585E072-16130
chr158642834186428474E081-37241
chr158642947186430089E081-35626
chr158643011286430245E081-35470
chr158643047986430562E081-35153
chr158643072786430777E081-34938
chr158643102886431220E081-34495
chr158643140186431544E081-34171
chr158643301486433096E081-32619
chr158643319786433377E081-32338
chr158643346286434135E081-31580
chr158643423486434335E081-31380
chr158643434986434448E081-31267
chr158644849986448611E081-17104
chr158644882486449438E081-16277
chr158644945286449585E081-16130
chr158645382786454461E081-11254
chr158645656186457092E081-8623
chr158645752186457571E081-8144
chr158647847586478525E08112760
chr158647854586478734E08112830
chr158648147586481583E08115760
chr158648211186482508E08116396
chr158648581986485869E08120104
chr158648587986486001E08120164
chr158648640886487459E08120693
chr158648756086487610E08121845
chr158642947186430089E082-35626
chr158643011286430245E082-35470
chr158643319786433377E082-32338
chr158643346286434135E082-31580
chr158643423486434335E082-31380
chr158643434986434448E082-31267
chr158644849986448611E082-17104
chr158648211186482508E08216396