rs11883829

Homo sapiens
A>G
TEX41 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0398 (11912/29924,GnomAD)
A==0410 (11947/29118,TOPMED)
A==0376 (1884/5008,1000G)
A==0333 (1282/3854,ALSPAC)
A==0336 (1247/3708,TWINSUK)
chr2:144762056 (GRCh38.p7) (2q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.144762056A>G
GRCh37.p13 chr 2NC_000002.11:g.145519623A>G

Gene: TEX41, testis expressed 41 (non-protein coding)(plus strand)

Molecule type Change Amino acid[Codon] SO Term
TEX41 transcriptNR_033870.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.602G=0.398
1000GenomesAmericanSub694A=0.280G=0.720
1000GenomesEast AsianSub1008A=0.227G=0.773
1000GenomesEuropeSub1006A=0.360G=0.640
1000GenomesGlobalStudy-wide5008A=0.376G=0.624
1000GenomesSouth AsianSub978A=0.310G=0.690
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.333G=0.667
The Genome Aggregation DatabaseAfricanSub8710A=0.553G=0.447
The Genome Aggregation DatabaseAmericanSub838A=0.230G=0.770
The Genome Aggregation DatabaseEast AsianSub1594A=0.197G=0.803
The Genome Aggregation DatabaseEuropeSub18480A=0.350G=0.649
The Genome Aggregation DatabaseGlobalStudy-wide29924A=0.398G=0.601
The Genome Aggregation DatabaseOtherSub302A=0.360G=0.640
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.410G=0.589
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.336G=0.664
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs118838290.000798alcohol consumption (maxi-drinks)24277619

eQTL of rs11883829 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11883829 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2145528417145529210E0678794
chr2145533155145533236E06813532
chr2145533386145534023E06813763
chr2145553727145553781E06834104
chr2145528417145529210E0708794
chr2145528417145529210E0718794
chr2145528417145529210E0748794
chr2145469778145470030E081-49593
chr2145555477145556040E08235854