SNP Detail Info-rs11885579

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

ERBB4 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0315 (9433/29880,GnomAD)
G=0376 (10966/29118,TOPMED)
G=0279 (1398/5008,1000G)

Position: chr2:211566804 (GRCh38.p7) (2q34)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
ERBB4 transcript variant JM-a/CVT-2	NM_001042599.1:c.	N/A	Intron Variant
ERBB4 transcript variant JM-a/CVT-1	NM_005235.2:c.	N/A	Intron Variant
ERBB4 transcript variant X7	XM_005246376.2:c.	N/A	Intron Variant
ERBB4 transcript variant X8	XM_005246377.2:c.	N/A	Intron Variant
ERBB4 transcript variant X5	XM_006712364.2:c.	N/A	Intron Variant
ERBB4 transcript variant X1	XM_017003577.1:c.	N/A	Intron Variant
ERBB4 transcript variant X2	XM_017003578.1:c.	N/A	Intron Variant
ERBB4 transcript variant X3	XM_017003579.1:c.	N/A	Intron Variant
ERBB4 transcript variant X4	XM_017003580.1:c.	N/A	Intron Variant
ERBB4 transcript variant X6	XM_017003581.1:c.	N/A	Intron Variant
ERBB4 transcript variant X9	XM_017003582.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.364	G=0.636
1000Genomes	American	Sub	694	A=0.860	G=0.140
1000Genomes	East Asian	Sub	1008	A=0.939	G=0.061
1000Genomes	Europe	Sub	1006	A=0.795	G=0.205
1000Genomes	Global	Study-wide	5008	A=0.721	G=0.279
1000Genomes	South Asian	Sub	978	A=0.800	G=0.200
The Genome Aggregation Database	African	Sub	8694	A=0.418	G=0.582
The Genome Aggregation Database	American	Sub	830	A=0.850	G=0.150
The Genome Aggregation Database	East Asian	Sub	1616	A=0.947	G=0.053
The Genome Aggregation Database	Europe	Sub	18438	A=0.777	G=0.222
The Genome Aggregation Database	Global	Study-wide	29880	A=0.684	G=0.315
The Genome Aggregation Database	Other	Sub	302	A=0.780	G=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.623	G=0.376

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11885579	0.000938	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	212399397	212399669	E068	-31860
chr2	212399397	212399669	E069	-31860
chr2	212399397	212399669	E070	-31860
chr2	212398804	212398904	E074	-32625
chr2	212399397	212399669	E074	-31860
chr2	212399397	212399669	E081	-31860

rs11885579