SNP Detail Info-rs11888554

Molecule type	Change	Amino acid[Codon]	SO Term
PARD3B transcript variant 1	NM_001302769.1:c.	N/A	Intron Variant
PARD3B transcript variant 3	NM_057177.6:c.	N/A	Intron Variant
PARD3B transcript variant 2	NM_152526.5:c.	N/A	Intron Variant
PARD3B transcript variant 4	NM_205863.3:c.	N/A	Intron Variant
PARD3B transcript variant X1	XM_011510552.2:c.	N/A	Intron Variant
PARD3B transcript variant X13	XM_011510553.2:c.	N/A	Intron Variant
PARD3B transcript variant X2	XM_017003283.1:c.	N/A	Intron Variant
PARD3B transcript variant X3	XM_017003284.1:c.	N/A	Intron Variant
PARD3B transcript variant X4	XM_017003285.1:c.	N/A	Intron Variant
PARD3B transcript variant X5	XM_017003286.1:c.	N/A	Intron Variant
PARD3B transcript variant X6	XM_017003287.1:c.	N/A	Intron Variant
PARD3B transcript variant X7	XM_017003288.1:c.	N/A	Intron Variant
PARD3B transcript variant X8	XM_017003289.1:c.	N/A	Intron Variant
PARD3B transcript variant X9	XM_017003290.1:c.	N/A	Intron Variant
PARD3B transcript variant X10	XM_017003291.1:c.	N/A	Intron Variant
PARD3B transcript variant X11	XM_017003292.1:c.	N/A	Intron Variant
PARD3B transcript variant X12	XM_017003293.1:c.	N/A	Intron Variant
PARD3B transcript variant X14	XM_017003294.1:c.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.744	A=0.256
1000Genomes	American	Sub	694	C=0.850	A=0.150
1000Genomes	East Asian	Sub	1008	C=0.681	A=0.319
1000Genomes	Europe	Sub	1006	C=0.841	A=0.159
1000Genomes	Global	Study-wide	5008	C=0.785	A=0.215
1000Genomes	South Asian	Sub	978	C=0.840	A=0.160
The Genome Aggregation Database	African	Sub	8704	C=0.742	T=0.000
The Genome Aggregation Database	American	Sub	838	C=0.860	T=0.00,
The Genome Aggregation Database	East Asian	Sub	1618	C=0.683	T=0.000
The Genome Aggregation Database	Europe	Sub	18466	C=0.829	T=0.000
The Genome Aggregation Database	Global	Study-wide	29928	C=0.797	T=0.000
The Genome Aggregation Database	Other	Sub	302	C=0.830	T=0.00,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.798	A=0.201

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs11888554	0.000307	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	71651018	71651221	E067	-6400
chr2	71694657	71694753	E067	37036
chr2	71649879	71650251	E069	-7370
chr2	71651018	71651221	E069	-6400
chr2	71682483	71682852	E069	24862
chr2	71628565	71628702	E071	-28919
chr2	71649879	71650251	E071	-7370
chr2	71651018	71651221	E071	-6400
chr2	71649879	71650251	E072	-7370
chr2	71651018	71651221	E072	-6400
chr2	71651018	71651221	E073	-6400
chr2	71682198	71682334	E073	24577
chr2	71682483	71682852	E073	24862
chr2	71682911	71683683	E073	25290
chr2	71649879	71650251	E074	-7370
chr2	71651018	71651221	E074	-6400
chr2	71651018	71651221	E082	-6400
chr2	71680115	71680203	E082	22494

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr2	71616537	71616605	E067	-41016
chr2	71616667	71616794	E067	-40827
chr2	71616952	71617070	E067	-40551
chr2	71680410	71682031	E067	22789
chr2	71693253	71694425	E067	35632
chr2	71694484	71694601	E067	36863
chr2	71680410	71682031	E068	22789
chr2	71693253	71694425	E068	35632
chr2	71694484	71694601	E068	36863
chr2	71616952	71617070	E069	-40551
chr2	71680410	71682031	E069	22789
chr2	71693129	71693233	E069	35508
chr2	71693253	71694425	E069	35632
chr2	71616537	71616605	E071	-41016
chr2	71616667	71616794	E071	-40827
chr2	71616952	71617070	E071	-40551
chr2	71693253	71694425	E071	35632
chr2	71694484	71694601	E071	36863
chr2	71693253	71694425	E072	35632
chr2	71680410	71682031	E073	22789
chr2	71693253	71694425	E073	35632
chr2	71694484	71694601	E073	36863
chr2	71616537	71616605	E074	-41016
chr2	71616667	71616794	E074	-40827
chr2	71616952	71617070	E074	-40551
chr2	71693129	71693233	E074	35508
chr2	71693253	71694425	E074	35632
chr2	71694484	71694601	E074	36863

rs11888554