rs11916446

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0326 (9771/29896,GnomAD)
T=0326 (9519/29118,TOPMED)
T=0279 (1399/5008,1000G)
T=0304 (1172/3854,ALSPAC)
T=0322 (1193/3708,TWINSUK)
chr3:165118584 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.165118584G>T
GRCh37.p13 chr 3NC_000003.11:g.164836372G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.620T=0.380
1000GenomesAmericanSub694G=0.790T=0.210
1000GenomesEast AsianSub1008G=0.868T=0.132
1000GenomesEuropeSub1006G=0.707T=0.293
1000GenomesGlobalStudy-wide5008G=0.721T=0.279
1000GenomesSouth AsianSub978G=0.670T=0.330
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.696T=0.304
The Genome Aggregation DatabaseAfricanSub8710G=0.615T=0.385
The Genome Aggregation DatabaseAmericanSub834G=0.800T=0.200
The Genome Aggregation DatabaseEast AsianSub1614G=0.835T=0.165
The Genome Aggregation DatabaseEuropeSub18436G=0.680T=0.319
The Genome Aggregation DatabaseGlobalStudy-wide29896G=0.673T=0.326
The Genome Aggregation DatabaseOtherSub302G=0.720T=0.280
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.673T=0.326
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.678T=0.322
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs119164469.1E-05alcoholism (heaviness of drinking)21529783

eQTL of rs11916446 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11916446 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.