rs11919880

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0333 (9965/29866,GnomAD)
G=0324 (9437/29118,TOPMED)
G=0227 (1137/5008,1000G)
G=0444 (1711/3854,ALSPAC)
G=0429 (1591/3708,TWINSUK)
chr3:32920559 (GRCh38.p7) (3p22.3)
AD
GWASCatalog
1   publication(s)
See rs on genome
19 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.32920559A>G
GRCh37.p13 chr 3NC_000003.11:g.32962051A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.819G=0.181
1000GenomesAmericanSub694A=0.690G=0.310
1000GenomesEast AsianSub1008A=0.979G=0.021
1000GenomesEuropeSub1006A=0.567G=0.433
1000GenomesGlobalStudy-wide5008A=0.773G=0.227
1000GenomesSouth AsianSub978A=0.770G=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.556G=0.444
The Genome Aggregation DatabaseAfricanSub8684A=0.786G=0.214
The Genome Aggregation DatabaseAmericanSub836A=0.690G=0.310
The Genome Aggregation DatabaseEast AsianSub1616A=0.980G=0.020
The Genome Aggregation DatabaseEuropeSub18428A=0.582G=0.417
The Genome Aggregation DatabaseGlobalStudy-wide29866A=0.666G=0.333
The Genome Aggregation DatabaseOtherSub302A=0.590G=0.410
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.675G=0.324
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.571G=0.429
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs119198806E-06alcohol dependence29071344

eQTL of rs11919880 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11919880 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr33291493432915014E068-47037
chr33291514732915236E068-46815
chr33291534632915452E068-46599
chr33292664432926912E068-35139
chr33292709932927340E068-34711
chr33292791732928040E068-34011
chr33293779532937862E068-24189
chr33292664432926912E070-35139
chr33292709932927340E070-34711
chr33291493432915014E072-47037
chr33291514732915236E072-46815
chr33291534632915452E073-46599
chr33291546432915558E073-46493
chr33291406732914135E081-47916
chr33291416032914905E081-47146
chr33292664432926912E081-35139
chr33292709932927340E081-34711
chr33292664432926912E082-35139
chr33292709932927340E082-34711






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr33294445532944908E070-17143
chr33294445532944908E082-17143