SNP Detail Info-rs11936591

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0056 (1673/29880,GnomAD)
T=0051 (1489/29118,TOPMED)
T=0073 (364/5008,1000G)
T=0032 (122/3854,ALSPAC)
T=0023 (84/3708,TWINSUK)

Position: chr4:133233577 (GRCh38.p7) (4q28.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.133233577C>T
GRCh37.p13 chr 4	NC_000004.11:g.134154732C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.902	T=0.098
1000Genomes	American	Sub	694	C=0.950	T=0.050
1000Genomes	East Asian	Sub	1008	C=0.904	T=0.096
1000Genomes	Europe	Sub	1006	C=0.968	T=0.032
1000Genomes	Global	Study-wide	5008	C=0.927	T=0.073
1000Genomes	South Asian	Sub	978	C=0.930	T=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.968	T=0.032
The Genome Aggregation Database	African	Sub	8706	C=0.925	T=0.075
The Genome Aggregation Database	American	Sub	838	C=0.950	T=0.050
The Genome Aggregation Database	East Asian	Sub	1622	C=0.921	T=0.079
The Genome Aggregation Database	Europe	Sub	18412	C=0.953	T=0.046
The Genome Aggregation Database	Global	Study-wide	29880	C=0.944	T=0.056
The Genome Aggregation Database	Other	Sub	302	C=0.990	T=0.010
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.948	T=0.051
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.977	T=0.023

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs11936591	9.95E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11936591