rs11937897

Homo sapiens
A>G
LOC729307 : Non Coding Transcript Variant
LOC105377441 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0237 (7094/29900,GnomAD)
A==0235 (6862/29118,TOPMED)
A==0219 (1099/5008,1000G)
A==0229 (881/3854,ALSPAC)
A==0234 (868/3708,TWINSUK)
chr4:137197806 (GRCh38.p7) (4q28.3)
AD
GWASdb2
1   publication(s)
See rs on genome
6 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.137197806A>G
GRCh37.p13 chr 4NC_000004.11:g.138118960A>G

Gene: LOC729307, uncharacterized LOC729307(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC02510 transcriptNR_134640.1:n.101...NR_134640.1:n.1015A>GA>GNon Coding Transcript Variant

Gene: LOC105377441, uncharacterized LOC105377441(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105377441 transcript variant X1XR_001741835.1:n.N/AIntron Variant
LOC105377441 transcript variant X2XR_001741836.1:n.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.222G=0.778
1000GenomesAmericanSub694A=0.360G=0.640
1000GenomesEast AsianSub1008A=0.132G=0.868
1000GenomesEuropeSub1006A=0.251G=0.749
1000GenomesGlobalStudy-wide5008A=0.219G=0.781
1000GenomesSouth AsianSub978A=0.170G=0.830
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.229G=0.771
The Genome Aggregation DatabaseAfricanSub8708A=0.225G=0.775
The Genome Aggregation DatabaseAmericanSub836A=0.340G=0.660
The Genome Aggregation DatabaseEast AsianSub1608A=0.120G=0.880
The Genome Aggregation DatabaseEuropeSub18448A=0.250G=0.749
The Genome Aggregation DatabaseGlobalStudy-wide29900A=0.237G=0.762
The Genome Aggregation DatabaseOtherSub300A=0.150G=0.850
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.235G=0.764
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.234G=0.766
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs119378971.15E-05alcohol consumption23743675

eQTL of rs11937897 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11937897 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr4138127852138128346E0708892
chr4138127852138128346E0748892
chr4138134603138134662E07415643
chr4138134825138135023E07415865
chr4138127852138128346E0818892
chr4138127852138128346E0828892