rs11947897

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0011 (349/29900,GnomAD)
A=0018 (532/29118,TOPMED)
A=0011 (57/5008,1000G)
chr4:70320004 (GRCh38.p7) (4q13.3)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.70320004C>A
GRCh37.p13 chr 4NC_000004.11:g.71185721C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.958A=0.042
1000GenomesAmericanSub694C=1.000A=0.000
1000GenomesEast AsianSub1008C=1.000A=0.000
1000GenomesEuropeSub1006C=1.000A=0.000
1000GenomesGlobalStudy-wide5008C=0.989A=0.011
1000GenomesSouth AsianSub978C=1.000A=0.000
The Genome Aggregation DatabaseAfricanSub8722C=0.961A=0.039
The Genome Aggregation DatabaseAmericanSub832C=0.990A=0.010
The Genome Aggregation DatabaseEast AsianSub1576C=1.000A=0.000
The Genome Aggregation DatabaseEuropeSub18468C=0.999A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29900C=0.988A=0.011
The Genome Aggregation DatabaseOtherSub302C=1.000A=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.981A=0.018
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs119478970.00042alcohol dependence20201924

eQTL of rs11947897 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11947897 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr47123127171231638E07045550
chr47114273271143309E071-42412