rs11965507

Homo sapiens
G>A
UST : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0161 (4853/29970,GnomAD)
A=0171 (4992/29118,TOPMED)
A=0114 (571/5008,1000G)
A=0132 (507/3854,ALSPAC)
A=0131 (485/3708,TWINSUK)
chr6:148874287 (GRCh38.p7) (6q25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
90 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.148874287G>A
GRCh37.p13 chr 6NC_000006.11:g.149195423G>A

Gene: UST, uronyl 2-sulfotransferase(plus strand)

Molecule type Change Amino acid[Codon] SO Term
UST transcriptNM_005715.2:c.N/AIntron Variant
UST transcript variant X2XM_011535378.2:c.N/AIntron Variant
UST transcript variant X3XM_017010152.1:c.N/AIntron Variant
UST transcript variant X1XR_001743088.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.762A=0.238
1000GenomesAmericanSub694G=0.870A=0.130
1000GenomesEast AsianSub1008G=0.992A=0.008
1000GenomesEuropeSub1006G=0.888A=0.112
1000GenomesGlobalStudy-wide5008G=0.886A=0.114
1000GenomesSouth AsianSub978G=0.950A=0.050
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.868A=0.132
The Genome Aggregation DatabaseAfricanSub8728G=0.769A=0.231
The Genome Aggregation DatabaseAmericanSub838G=0.890A=0.110
The Genome Aggregation DatabaseEast AsianSub1620G=0.998A=0.002
The Genome Aggregation DatabaseEuropeSub18482G=0.852A=0.147
The Genome Aggregation DatabaseGlobalStudy-wide29970G=0.838A=0.161
The Genome Aggregation DatabaseOtherSub302G=0.920A=0.080
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.828A=0.171
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.869A=0.131
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs119655074.04E-05alcohol consumption23743675

eQTL of rs11965507 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11965507 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6149195808149196396E067385
chr6149209362149209428E06713939
chr6149209652149209778E06714229
chr6149168241149168295E068-27128
chr6149168341149168524E068-26899
chr6149168543149168767E068-26656
chr6149169094149169162E068-26261
chr6149169972149170026E068-25397
chr6149170135149170347E068-25076
chr6149206324149208012E06810901
chr6149208118149208162E06812695
chr6149208213149208708E06812790
chr6149208876149208970E06813453
chr6149209362149209428E06813939
chr6149209652149209778E06814229
chr6149209861149210582E06814438
chr6149168543149168767E069-26656
chr6149169094149169162E069-26261
chr6149194710149195020E070-403
chr6149195066149195265E070-158
chr6149195366149195424E0700
chr6149195808149196396E070385
chr6149208118149208162E07012695
chr6149209652149209778E07014229
chr6149209861149210582E07014438
chr6149228555149228615E07033132
chr6149228816149229011E07033393
chr6149208118149208162E07112695
chr6149208213149208708E07112790
chr6149208876149208970E07113453
chr6149209861149210582E07114438
chr6149210632149210710E07115209
chr6149195808149196396E072385
chr6149209652149209778E07214229
chr6149209861149210582E07214438
chr6149209861149210582E07314438
chr6149168241149168295E074-27128
chr6149168341149168524E074-26899
chr6149168543149168767E074-26656
chr6149169094149169162E074-26261
chr6149169317149169423E074-26000
chr6149195066149195265E074-158
chr6149195808149196396E074385
chr6149208213149208708E07412790
chr6149208876149208970E07413453
chr6149209362149209428E07413939
chr6149209652149209778E07414229
chr6149209861149210582E07414438
chr6149210632149210710E07415209
chr6149148140149148317E081-47106
chr6149148616149149362E081-46061
chr6149149615149149777E081-45646
chr6149150073149150156E081-45267
chr6149150325149150460E081-44963
chr6149156704149156979E081-38444
chr6149157032149157850E081-37573
chr6149172062149172173E081-23250
chr6149172642149172762E081-22661
chr6149172793149173794E081-21629
chr6149173868149173948E081-21475
chr6149195808149196396E081385
chr6149206038149206100E08110615
chr6149206191149206287E08110768
chr6149208213149208708E08112790
chr6149208876149208970E08113453
chr6149209362149209428E08113939
chr6149209652149209778E08114229
chr6149209861149210582E08114438
chr6149211349149211483E08115926
chr6149211525149212204E08116102
chr6149212215149212330E08116792
chr6149212331149212436E08116908
chr6149212449149212631E08117026
chr6149226566149226616E08131143
chr6149226771149226879E08131348
chr6149227281149227331E08131858
chr6149236951149237258E08141528
chr6149237541149237675E08142118
chr6149237964149238203E08142541
chr6149172793149173794E082-21629
chr6149173868149173948E082-21475
chr6149206191149206287E08210768
chr6149206324149208012E08210901
chr6149209861149210582E08214438
chr6149211349149211483E08215926
chr6149211525149212204E08216102
chr6149226075149226444E08230652
chr6149226566149226616E08231143
chr6149226771149226879E08231348
chr6149227281149227331E08231858