SNP Detail Info-rs11966981

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LOC105377899 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0191 (5732/29906,GnomAD)
A=0225 (6567/29118,TOPMED)
A=0163 (817/5008,1000G)
A=0161 (620/3854,ALSPAC)
A=0153 (567/3708,TWINSUK)

Position: chr6:93624202 (GRCh38.p7) (6q16.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.93624202G>A
GRCh37.p13 chr 6	NC_000006.11:g.94333920G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105377899 transcript	XR_001744262.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.670	A=0.330
1000Genomes	American	Sub	694	G=0.810	A=0.190
1000Genomes	East Asian	Sub	1008	G=0.986	A=0.014
1000Genomes	Europe	Sub	1006	G=0.837	A=0.163
1000Genomes	Global	Study-wide	5008	G=0.837	A=0.163
1000Genomes	South Asian	Sub	978	G=0.930	A=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.839	A=0.161
The Genome Aggregation Database	African	Sub	8704	G=0.684	A=0.316
The Genome Aggregation Database	American	Sub	836	G=0.840	A=0.160
The Genome Aggregation Database	East Asian	Sub	1592	G=0.982	A=0.018
The Genome Aggregation Database	Europe	Sub	18472	G=0.849	A=0.150
The Genome Aggregation Database	Global	Study-wide	29906	G=0.808	A=0.191
The Genome Aggregation Database	Other	Sub	302	G=0.860	A=0.140
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.774	A=0.225
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.847	A=0.153

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11966981	0.00094	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11966981