rs11973510

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0064 (1940/29890,GnomAD)
A=0085 (2501/29118,TOPMED)
A=0069 (348/5008,1000G)
A=0052 (200/3854,ALSPAC)
A=0058 (215/3708,TWINSUK)
chr7:19171630 (GRCh38.p7) (7p21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
7 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.19171630C>A
GRCh37.p13 chr 7NC_000007.13:g.19211253C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.886A=0.114
1000GenomesAmericanSub694C=0.960A=0.040
1000GenomesEast AsianSub1008C=0.954A=0.046
1000GenomesEuropeSub1006C=0.948A=0.052
1000GenomesGlobalStudy-wide5008C=0.931A=0.069
1000GenomesSouth AsianSub978C=0.930A=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.948A=0.052
The Genome Aggregation DatabaseAfricanSub8712C=0.904A=0.096
The Genome Aggregation DatabaseAmericanSub838C=0.960A=0.040
The Genome Aggregation DatabaseEast AsianSub1582C=0.971A=0.029
The Genome Aggregation DatabaseEuropeSub18456C=0.945A=0.055
The Genome Aggregation DatabaseGlobalStudy-wide29890C=0.935A=0.064
The Genome Aggregation DatabaseOtherSub302C=0.960A=0.040
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.914A=0.085
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.942A=0.058
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs119735100.000866alcohol dependence21314694

eQTL of rs11973510 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11973510 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr71918581619186153E070-25100
chr71918581619186153E072-25100


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr71918410419184154E068-27099
chr71918421519185014E068-26239
chr71918410419184154E072-27099
chr71918421519185014E074-26239
chr71918323419184073E082-27180
chr71918410419184154E082-27099
chr71918421519185014E082-26239