SNP Detail Info-rs11984298

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0113 (3389/29750,GnomAD)
T=0136 (3982/29118,TOPMED)
T=0114 (571/5008,1000G)
T=0145 (557/3854,ALSPAC)
T=0137 (507/3708,TWINSUK)

Position: chr7:89640438 (GRCh38.p7) (7q21.13)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.89640438G>T
GRCh37.p13 chr 7	NC_000007.13:g.89269752G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.848	T=0.152
1000Genomes	American	Sub	694	G=0.870	T=0.130
1000Genomes	East Asian	Sub	1008	G=0.907	T=0.093
1000Genomes	Europe	Sub	1006	G=0.883	T=0.117
1000Genomes	Global	Study-wide	5008	G=0.886	T=0.114
1000Genomes	South Asian	Sub	978	G=0.930	T=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.855	T=0.145
The Genome Aggregation Database	African	Sub	8674	G=0.859	T=0.141
The Genome Aggregation Database	American	Sub	834	G=0.860	T=0.140
The Genome Aggregation Database	East Asian	Sub	1600	G=0.916	T=0.084
The Genome Aggregation Database	Europe	Sub	18346	G=0.898	T=0.101
The Genome Aggregation Database	Global	Study-wide	29750	G=0.886	T=0.113
The Genome Aggregation Database	Other	Sub	296	G=0.800	T=0.200
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.863	T=0.136
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.863	T=0.137

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11984298	0.000939	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11984298