rs12036795

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0309 (9028/29164,GnomAD)
C=0377 (1888/5008,1000G)
C=0303 (1166/3854,ALSPAC)
C=0303 (1123/3708,TWINSUK)
chr1:196120688 (GRCh38.p7) (1q31.3)
AD
GWASdb2
1   publication(s)
See rs on genome
39 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.196120688A>C
GRCh37.p13 chr 1NC_000001.10:g.196089818A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.721C=0.279
1000GenomesAmericanSub694A=0.590C=0.410
1000GenomesEast AsianSub1008A=0.626C=0.374
1000GenomesEuropeSub1006A=0.697C=0.303
1000GenomesGlobalStudy-wide5008A=0.623C=0.377
1000GenomesSouth AsianSub978A=0.430C=0.570
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.697C=0.303
The Genome Aggregation DatabaseAfricanSub8542A=0.694C=0.306
The Genome Aggregation DatabaseAmericanSub808A=0.640C=0.360
The Genome Aggregation DatabaseEast AsianSub1584A=0.614C=0.386
The Genome Aggregation DatabaseEuropeSub17932A=0.698C=0.301
The Genome Aggregation DatabaseGlobalStudy-wide29164A=0.690C=0.309
The Genome Aggregation DatabaseOtherSub298A=0.620C=0.380
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.697C=0.303
PMID Title Author Journal
19581569Genome-wide association study of alcohol dependence.Treutlein JArch Gen Psychiatry

P-Value

SNP ID p-value Traits Study
rs120367953.94E-05alcohol dependence19581569

eQTL of rs12036795 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs12036795 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1196066440196066490E067-23328
chr1196066674196066759E067-23059
chr1196066852196066954E067-22864
chr1196084863196085141E067-4677
chr1196066852196066954E068-22864
chr1196067294196067384E068-22434
chr1196067424196067480E068-22338
chr1196084863196085141E068-4677
chr1196066440196066490E069-23328
chr1196066674196066759E069-23059
chr1196066852196066954E069-22864
chr1196067294196067384E069-22434
chr1196067424196067480E069-22338
chr1196068079196068129E069-21689
chr1196084863196085141E069-4677
chr1196066440196066490E070-23328
chr1196066674196066759E070-23059
chr1196066852196066954E070-22864
chr1196066440196066490E071-23328
chr1196066674196066759E071-23059
chr1196066852196066954E071-22864
chr1196067294196067384E071-22434
chr1196084863196085141E071-4677
chr1196066440196066490E072-23328
chr1196066674196066759E072-23059
chr1196066852196066954E072-22864
chr1196067294196067384E072-22434
chr1196067424196067480E072-22338
chr1196075137196075332E072-14486
chr1196084863196085141E072-4677
chr1196067294196067384E073-22434
chr1196067424196067480E073-22338
chr1196066440196066490E074-23328
chr1196066674196066759E074-23059
chr1196066852196066954E074-22864
chr1196067294196067384E074-22434
chr1196067424196067480E074-22338
chr1196084863196085141E074-4677
chr1196060936196061134E081-28684