Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.102862176G>A |
GRCh37.p13 chr 2 | NC_000002.11:g.103478635G>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.818 | A=0.182 |
1000Genomes | American | Sub | 694 | G=0.810 | A=0.190 |
1000Genomes | East Asian | Sub | 1008 | G=0.735 | A=0.265 |
1000Genomes | Europe | Sub | 1006 | G=0.845 | A=0.155 |
1000Genomes | Global | Study-wide | 5008 | G=0.802 | A=0.198 |
1000Genomes | South Asian | Sub | 978 | G=0.800 | A=0.200 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.873 | A=0.127 |
The Genome Aggregation Database | African | Sub | 8726 | G=0.825 | A=0.175 |
The Genome Aggregation Database | American | Sub | 838 | G=0.830 | A=0.170 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=0.753 | A=0.247 |
The Genome Aggregation Database | Europe | Sub | 18494 | G=0.881 | A=0.118 |
The Genome Aggregation Database | Global | Study-wide | 29980 | G=0.856 | A=0.143 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.820 | A=0.180 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | G=0.842 | A=0.157 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.888 | A=0.112 |
PMID | Title | Author | Journal |
---|---|---|---|
20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs12052617 | 2.92E-05 | alcohol and nictotine co-dependence | 20158304 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 103443478 | 103443688 | E067 | -34947 |
chr2 | 103443711 | 103444103 | E067 | -34532 |
chr2 | 103457140 | 103457610 | E067 | -21025 |
chr2 | 103457782 | 103458022 | E067 | -20613 |
chr2 | 103458067 | 103458132 | E067 | -20503 |
chr2 | 103443478 | 103443688 | E068 | -34947 |
chr2 | 103443711 | 103444103 | E068 | -34532 |
chr2 | 103456253 | 103456782 | E068 | -21853 |
chr2 | 103443478 | 103443688 | E069 | -34947 |
chr2 | 103456253 | 103456782 | E069 | -21853 |
chr2 | 103457140 | 103457610 | E069 | -21025 |
chr2 | 103443478 | 103443688 | E070 | -34947 |
chr2 | 103443711 | 103444103 | E070 | -34532 |
chr2 | 103449588 | 103449683 | E070 | -28952 |
chr2 | 103450167 | 103450233 | E070 | -28402 |
chr2 | 103456253 | 103456782 | E070 | -21853 |
chr2 | 103457140 | 103457610 | E070 | -21025 |
chr2 | 103460330 | 103460495 | E070 | -18140 |
chr2 | 103460621 | 103460728 | E070 | -17907 |
chr2 | 103466914 | 103466983 | E070 | -11652 |
chr2 | 103443163 | 103443217 | E071 | -35418 |
chr2 | 103443478 | 103443688 | E071 | -34947 |
chr2 | 103443711 | 103444103 | E071 | -34532 |
chr2 | 103456253 | 103456782 | E071 | -21853 |
chr2 | 103443478 | 103443688 | E072 | -34947 |
chr2 | 103443711 | 103444103 | E072 | -34532 |
chr2 | 103456253 | 103456782 | E072 | -21853 |
chr2 | 103443478 | 103443688 | E074 | -34947 |
chr2 | 103456253 | 103456782 | E074 | -21853 |
chr2 | 103429900 | 103430145 | E081 | -48490 |
chr2 | 103443163 | 103443217 | E081 | -35418 |
chr2 | 103443711 | 103444103 | E081 | -34532 |
chr2 | 103456253 | 103456782 | E081 | -21853 |
chr2 | 103457140 | 103457610 | E081 | -21025 |
chr2 | 103457782 | 103458022 | E081 | -20613 |
chr2 | 103458067 | 103458132 | E081 | -20503 |
chr2 | 103443163 | 103443217 | E082 | -35418 |
chr2 | 103443478 | 103443688 | E082 | -34947 |
chr2 | 103443711 | 103444103 | E082 | -34532 |
chr2 | 103460621 | 103460728 | E082 | -17907 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr2 | 103464789 | 103465338 | E067 | -13297 |
chr2 | 103464789 | 103465338 | E069 | -13297 |
chr2 | 103464789 | 103465338 | E072 | -13297 |
chr2 | 103464789 | 103465338 | E074 | -13297 |
chr2 | 103464789 | 103465338 | E082 | -13297 |