SNP Detail Info-rs12096806

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0054 (1636/29958,GnomAD)
A=0085 (2490/29118,TOPMED)
A=0069 (348/5008,1000G)
A=0003 (12/3854,ALSPAC)
A=0002 (9/3708,TWINSUK)

Position: chr1:152670684 (GRCh38.p7) (1q21.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 3 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.152670684G>A
GRCh37.p13 chr 1	NC_000001.10:g.152643160G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.749	A=0.251
1000Genomes	American	Sub	694	G=0.990	A=0.010
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=0.997	A=0.003
1000Genomes	Global	Study-wide	5008	G=0.931	A=0.069
1000Genomes	South Asian	Sub	978	G=0.990	A=0.010
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.997	A=0.003
The Genome Aggregation Database	African	Sub	8706	G=0.817	A=0.183
The Genome Aggregation Database	American	Sub	838	G=0.990	A=0.010
The Genome Aggregation Database	East Asian	Sub	1618	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18494	G=0.998	A=0.001
The Genome Aggregation Database	Global	Study-wide	29958	G=0.945	A=0.054
The Genome Aggregation Database	Other	Sub	302	G=0.970	A=0.030
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.914	A=0.085
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.998	A=0.002

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs12096806	0.000322	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	152652740	152652839	E081	9580
chr1	152653543	152653753	E081	10383
chr1	152654162	152654454	E081	11002

rs12096806