rs12113550

Homo sapiens
A>G
ZNF786 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0011 (335/29988,GnomAD)
G=0017 (506/29118,TOPMED)
G=0013 (63/5008,1000G)
chr7:149081590 (GRCh38.p7) (7q36.1)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
29 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.149081590A>G
GRCh37.p13 chr 7NC_000007.13:g.148778682A>G

Gene: ZNF786, zinc finger protein 786(minus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF786 transcriptNM_152411.3:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.955G=0.045
1000GenomesAmericanSub694A=0.990G=0.010
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=1.000G=0.000
1000GenomesGlobalStudy-wide5008A=0.987G=0.013
1000GenomesSouth AsianSub978A=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8730A=0.962G=0.038
The Genome Aggregation DatabaseAmericanSub838A=1.000G=0.000
The Genome Aggregation DatabaseEast AsianSub1620A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18498A=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29988A=0.988G=0.011
The Genome Aggregation DatabaseOtherSub302A=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.982G=0.017
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs121135500.00037alcohol dependence20201924

eQTL of rs12113550 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs12113550 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7148752304148752601E068-26081
chr7148752304148752601E071-26081
chr7148825594148825654E07446912
chr7148799583148799660E08120901
chr7148799789148800080E08121107
chr7148800105148800173E08121423
chr7148800673148800808E08121991




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr7148761954148763339E067-15343
chr7148787120148789037E0678438
chr7148822266148825533E06743584
chr7148761954148763339E068-15343
chr7148787120148789037E0688438
chr7148822266148825533E06843584
chr7148761954148763339E069-15343
chr7148787120148789037E0698438
chr7148822266148825533E06943584
chr7148761954148763339E070-15343
chr7148787120148789037E0708438
chr7148822266148825533E07043584
chr7148761954148763339E071-15343
chr7148787120148789037E0718438
chr7148822266148825533E07143584
chr7148761954148763339E072-15343
chr7148787120148789037E0728438
chr7148822266148825533E07243584
chr7148761954148763339E073-15343
chr7148787120148789037E0738438
chr7148822266148825533E07343584
chr7148761954148763339E074-15343
chr7148787120148789037E0748438
chr7148822266148825533E07443584
chr7148761954148763339E081-15343
chr7148822266148825533E08143584
chr7148761954148763339E082-15343
chr7148787120148789037E0828438
chr7148822266148825533E08243584