SNP Detail Info-rs12116456

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0086 (2505/29118,TOPMED)
A=0093 (468/5008,1000G)
A=0095 (365/3854,ALSPAC)
A=0107 (396/3708,TWINSUK)

Position: chr1:90675639 (GRCh38.p7) (1p22.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 13 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.90675639G>A
GRCh37.p13 chr 1	NC_000001.10:g.91141196G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.933	A=0.067
1000Genomes	American	Sub	694	G=0.840	A=0.160
1000Genomes	East Asian	Sub	1008	G=0.943	A=0.057
1000Genomes	Europe	Sub	1006	G=0.887	A=0.113
1000Genomes	Global	Study-wide	5008	G=0.907	A=0.093
1000Genomes	South Asian	Sub	978	G=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.905	A=0.095
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.914	A=0.086
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.893	A=0.107

PMID	Title	Author	Journal

SNP ID	p-value	Traits	Study
rs12116456	8.28E-05	alcoholism	pha002893

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr1	91172033	91173502	E068	30837
chr1	91183020	91183215	E070	41824
chr1	91183231	91183269	E070	42035
chr1	91183292	91183954	E070	42096
chr1	91183020	91183215	E071	41824
chr1	91183231	91183269	E071	42035
chr1	91183292	91183954	E071	42096
chr1	91183020	91183215	E074	41824
chr1	91183231	91183269	E074	42035
chr1	91183292	91183954	E074	42096
chr1	91183020	91183215	E082	41824
chr1	91183231	91183269	E082	42035
chr1	91183292	91183954	E082	42096

rs12116456