rs1215130

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0401 (11890/29588,GnomAD)
C==0406 (11849/29118,TOPMED)
C==0458 (2294/5008,1000G)
C==0392 (1511/3854,ALSPAC)
C==0383 (1420/3708,TWINSUK)
chr9:15343711 (GRCh38.p7) (9p22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
17 Enhancers around
17 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.15343711C>T
GRCh37.p13 chr 9NC_000009.11:g.15343709C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.447T=0.553
1000GenomesAmericanSub694C=0.360T=0.640
1000GenomesEast AsianSub1008C=0.548T=0.452
1000GenomesEuropeSub1006C=0.369T=0.631
1000GenomesGlobalStudy-wide5008C=0.458T=0.542
1000GenomesSouth AsianSub978C=0.540T=0.460
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.392T=0.608
The Genome Aggregation DatabaseAfricanSub8664C=0.439T=0.561
The Genome Aggregation DatabaseAmericanSub828C=0.360T=0.640
The Genome Aggregation DatabaseEast AsianSub1604C=0.568T=0.432
The Genome Aggregation DatabaseEuropeSub18190C=0.371T=0.628
The Genome Aggregation DatabaseGlobalStudy-wide29588C=0.401T=0.598
The Genome Aggregation DatabaseOtherSub302C=0.390T=0.610
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.406T=0.593
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.383T=0.617
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs12151300.000508alcohol dependence20201924

eQTL of rs1215130 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1215130 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr91529374915294967E069-48742
chr91535109015351434E0697381
chr91535144415351554E0697735
chr91529374915294967E071-48742
chr91535109015351434E0717381
chr91535144415351554E0717735
chr91535109015351434E0727381
chr91537086715371337E07227158
chr91535109015351434E0737381
chr91535144415351554E0737735
chr91537060415370697E08126895
chr91537070715370851E08126998
chr91537086715371337E08127158
chr91536927415369476E08225565
chr91537060415370697E08226895
chr91537070715370851E08226998
chr91537086715371337E08227158






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr91529556015296585E067-47124
chr91530558815308020E067-35689
chr91529556015296585E068-47124
chr91530558815308020E068-35689
chr91529556015296585E069-47124
chr91530558815308020E069-35689
chr91530558815308020E070-35689
chr91529556015296585E071-47124
chr91530558815308020E071-35689
chr91529556015296585E072-47124
chr91530558815308020E072-35689
chr91529556015296585E073-47124
chr91530558815308020E073-35689
chr91529556015296585E074-47124
chr91530558815308020E074-35689
chr91530558815308020E081-35689
chr91530558815308020E082-35689