SNP Detail Info-rs1215130

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C==0401 (11890/29588,GnomAD)
C==0406 (11849/29118,TOPMED)
C==0458 (2294/5008,1000G)
C==0392 (1511/3854,ALSPAC)
C==0383 (1420/3708,TWINSUK)

Position: chr9:15343711 (GRCh38.p7) (9p22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 17 Enhancers around

Promoter: 17 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.15343711C>T
GRCh37.p13 chr 9	NC_000009.11:g.15343709C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.447	T=0.553
1000Genomes	American	Sub	694	C=0.360	T=0.640
1000Genomes	East Asian	Sub	1008	C=0.548	T=0.452
1000Genomes	Europe	Sub	1006	C=0.369	T=0.631
1000Genomes	Global	Study-wide	5008	C=0.458	T=0.542
1000Genomes	South Asian	Sub	978	C=0.540	T=0.460
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.392	T=0.608
The Genome Aggregation Database	African	Sub	8664	C=0.439	T=0.561
The Genome Aggregation Database	American	Sub	828	C=0.360	T=0.640
The Genome Aggregation Database	East Asian	Sub	1604	C=0.568	T=0.432
The Genome Aggregation Database	Europe	Sub	18190	C=0.371	T=0.628
The Genome Aggregation Database	Global	Study-wide	29588	C=0.401	T=0.598
The Genome Aggregation Database	Other	Sub	302	C=0.390	T=0.610
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.406	T=0.593
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.383	T=0.617

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1215130	0.000508	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	15293749	15294967	E069	-48742
chr9	15351090	15351434	E069	7381
chr9	15351444	15351554	E069	7735
chr9	15293749	15294967	E071	-48742
chr9	15351090	15351434	E071	7381
chr9	15351444	15351554	E071	7735
chr9	15351090	15351434	E072	7381
chr9	15370867	15371337	E072	27158
chr9	15351090	15351434	E073	7381
chr9	15351444	15351554	E073	7735
chr9	15370604	15370697	E081	26895
chr9	15370707	15370851	E081	26998
chr9	15370867	15371337	E081	27158
chr9	15369274	15369476	E082	25565
chr9	15370604	15370697	E082	26895
chr9	15370707	15370851	E082	26998
chr9	15370867	15371337	E082	27158

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr9	15295560	15296585	E067	-47124
chr9	15305588	15308020	E067	-35689
chr9	15295560	15296585	E068	-47124
chr9	15305588	15308020	E068	-35689
chr9	15295560	15296585	E069	-47124
chr9	15305588	15308020	E069	-35689
chr9	15305588	15308020	E070	-35689
chr9	15295560	15296585	E071	-47124
chr9	15305588	15308020	E071	-35689
chr9	15295560	15296585	E072	-47124
chr9	15305588	15308020	E072	-35689
chr9	15295560	15296585	E073	-47124
chr9	15305588	15308020	E073	-35689
chr9	15295560	15296585	E074	-47124
chr9	15305588	15308020	E074	-35689
chr9	15305588	15308020	E081	-35689
chr9	15305588	15308020	E082	-35689

rs1215130