rs12164904

Homo sapiens
C>A / C>G
None
Check p-value
SNV (Single Nucleotide Variation)
C==0494 (14784/29888,GnomAD)
G=0491 (2458/5008,1000G)
chr15:63028335 (GRCh38.p7) (15q22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.63028335C>A
GRCh38.p7 chr 15NC_000015.10:g.63028335C>G
GRCh37.p13 chr 15NC_000015.9:g.63320534C>A
GRCh37.p13 chr 15NC_000015.9:g.63320534C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.542G=0.458
1000GenomesAmericanSub694C=0.390G=0.610
1000GenomesEast AsianSub1008C=0.687G=0.313
1000GenomesEuropeSub1006C=0.405G=0.595
1000GenomesGlobalStudy-wide5008C=0.509G=0.491
1000GenomesSouth AsianSub978C=0.470G=0.530
The Genome Aggregation DatabaseAfricanSub8684C=0.552G=0.448
The Genome Aggregation DatabaseAmericanSub836C=0.420G=0.580
The Genome Aggregation DatabaseEast AsianSub1610C=0.680G=0.320
The Genome Aggregation DatabaseEuropeSub18456C=0.457G=0.542
The Genome Aggregation DatabaseGlobalStudy-wide29888C=0.494G=0.505
The Genome Aggregation DatabaseOtherSub302C=0.360G=0.640
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs121649040.000938alcohol dependence21314694

eQTL of rs12164904 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs12164904 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.