Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 6 | NC_000006.12:g.161144126T>C |
GRCh37.p13 chr 6 | NC_000006.11:g.161565158T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
AGPAT4 transcript | NM_020133.2:c. | N/A | Intron Variant |
AGPAT4 transcript variant X3 | XM_005267053.3:c. | N/A | Intron Variant |
AGPAT4 transcript variant X1 | XM_006715514.3:c. | N/A | Intron Variant |
AGPAT4 transcript variant X2 | XM_017011059.1:c. | N/A | Intron Variant |
AGPAT4 transcript variant X4 | XR_001743516.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.768 | C=0.232 |
1000Genomes | American | Sub | 694 | T=0.900 | C=0.100 |
1000Genomes | East Asian | Sub | 1008 | T=0.991 | C=0.009 |
1000Genomes | Europe | Sub | 1006 | T=0.897 | C=0.103 |
1000Genomes | Global | Study-wide | 5008 | T=0.890 | C=0.110 |
1000Genomes | South Asian | Sub | 978 | T=0.930 | C=0.070 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.892 | C=0.108 |
The Exome Aggregation Consortium | American | Sub | 19852 | T=0.858 | C=0.141 |
The Exome Aggregation Consortium | Asian | Sub | 24422 | T=0.947 | C=0.052 |
The Exome Aggregation Consortium | Europe | Sub | 69224 | T=0.893 | C=0.107 |
The Exome Aggregation Consortium | Global | Study-wide | 114354 | T=0.898 | C=0.101 |
The Exome Aggregation Consortium | Other | Sub | 856 | T=0.910 | C=0.090 |
The Genome Aggregation Database | African | Sub | 8702 | T=0.792 | C=0.208 |
The Genome Aggregation Database | American | Sub | 838 | T=0.910 | C=0.090 |
The Genome Aggregation Database | East Asian | Sub | 1620 | T=0.990 | C=0.010 |
The Genome Aggregation Database | Europe | Sub | 18500 | T=0.894 | C=0.105 |
The Genome Aggregation Database | Global | Study-wide | 29962 | T=0.870 | C=0.129 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.870 | C=0.130 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.844 | C=0.155 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.885 | C=0.115 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs12191615 | 0.000864 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr6 | 161555775 | 161555853 | E067 | -9305 |
chr6 | 161556079 | 161556156 | E067 | -9002 |
chr6 | 161556224 | 161556290 | E067 | -8868 |
chr6 | 161556371 | 161556427 | E067 | -8731 |
chr6 | 161556533 | 161556583 | E067 | -8575 |
chr6 | 161556620 | 161556797 | E067 | -8361 |
chr6 | 161559263 | 161559689 | E067 | -5469 |
chr6 | 161559817 | 161559897 | E067 | -5261 |
chr6 | 161559976 | 161560066 | E067 | -5092 |
chr6 | 161560102 | 161560234 | E067 | -4924 |
chr6 | 161579580 | 161579630 | E067 | 14422 |
chr6 | 161581297 | 161581655 | E067 | 16139 |
chr6 | 161581768 | 161581850 | E067 | 16610 |
chr6 | 161581922 | 161581978 | E067 | 16764 |
chr6 | 161582011 | 161582165 | E067 | 16853 |
chr6 | 161582220 | 161582270 | E067 | 17062 |
chr6 | 161583820 | 161584120 | E067 | 18662 |
chr6 | 161584340 | 161584389 | E067 | 19182 |
chr6 | 161584584 | 161584878 | E067 | 19426 |
chr6 | 161589224 | 161590023 | E067 | 24066 |
chr6 | 161590288 | 161590419 | E067 | 25130 |
chr6 | 161590532 | 161590588 | E067 | 25374 |
chr6 | 161590711 | 161591801 | E067 | 25553 |
chr6 | 161592100 | 161592220 | E067 | 26942 |
chr6 | 161592282 | 161592345 | E067 | 27124 |
chr6 | 161592401 | 161592463 | E067 | 27243 |
chr6 | 161602164 | 161602452 | E067 | 37006 |
chr6 | 161602733 | 161602838 | E067 | 37575 |
chr6 | 161607151 | 161607448 | E067 | 41993 |
chr6 | 161607487 | 161607823 | E067 | 42329 |
chr6 | 161610297 | 161610366 | E067 | 45139 |
chr6 | 161610541 | 161610621 | E067 | 45383 |
chr6 | 161610832 | 161610912 | E067 | 45674 |
chr6 | 161611166 | 161611216 | E067 | 46008 |
chr6 | 161612080 | 161612374 | E067 | 46922 |
chr6 | 161555483 | 161555734 | E068 | -9424 |
chr6 | 161555775 | 161555853 | E068 | -9305 |
chr6 | 161556079 | 161556156 | E068 | -9002 |
chr6 | 161556224 | 161556290 | E068 | -8868 |
chr6 | 161556371 | 161556427 | E068 | -8731 |
chr6 | 161556533 | 161556583 | E068 | -8575 |
chr6 | 161556620 | 161556797 | E068 | -8361 |
chr6 | 161556838 | 161557078 | E068 | -8080 |
chr6 | 161557230 | 161557392 | E068 | -7766 |
chr6 | 161557432 | 161557681 | E068 | -7477 |
chr6 | 161557682 | 161557744 | E068 | -7414 |
chr6 | 161560102 | 161560234 | E068 | -4924 |
chr6 | 161583820 | 161584120 | E068 | 18662 |
chr6 | 161584340 | 161584389 | E068 | 19182 |
chr6 | 161584584 | 161584878 | E068 | 19426 |
chr6 | 161589224 | 161590023 | E068 | 24066 |
chr6 | 161590288 | 161590419 | E068 | 25130 |
chr6 | 161590532 | 161590588 | E068 | 25374 |
chr6 | 161590711 | 161591801 | E068 | 25553 |
chr6 | 161592100 | 161592220 | E068 | 26942 |
chr6 | 161602164 | 161602452 | E068 | 37006 |
chr6 | 161602733 | 161602838 | E068 | 37575 |
chr6 | 161607151 | 161607448 | E068 | 41993 |
chr6 | 161610297 | 161610366 | E068 | 45139 |
chr6 | 161610541 | 161610621 | E068 | 45383 |
chr6 | 161610832 | 161610912 | E068 | 45674 |
chr6 | 161522655 | 161522846 | E069 | -42312 |
chr6 | 161555483 | 161555734 | E069 | -9424 |
chr6 | 161555775 | 161555853 | E069 | -9305 |
chr6 | 161556079 | 161556156 | E069 | -9002 |
chr6 | 161556224 | 161556290 | E069 | -8868 |
chr6 | 161556371 | 161556427 | E069 | -8731 |
chr6 | 161556533 | 161556583 | E069 | -8575 |
chr6 | 161556620 | 161556797 | E069 | -8361 |
chr6 | 161556838 | 161557078 | E069 | -8080 |
chr6 | 161557230 | 161557392 | E069 | -7766 |
chr6 | 161559263 | 161559689 | E069 | -5469 |
chr6 | 161559817 | 161559897 | E069 | -5261 |
chr6 | 161559976 | 161560066 | E069 | -5092 |
chr6 | 161560102 | 161560234 | E069 | -4924 |
chr6 | 161579580 | 161579630 | E069 | 14422 |
chr6 | 161581297 | 161581655 | E069 | 16139 |
chr6 | 161581768 | 161581850 | E069 | 16610 |
chr6 | 161581922 | 161581978 | E069 | 16764 |
chr6 | 161582011 | 161582165 | E069 | 16853 |
chr6 | 161582220 | 161582270 | E069 | 17062 |
chr6 | 161583820 | 161584120 | E069 | 18662 |
chr6 | 161584340 | 161584389 | E069 | 19182 |
chr6 | 161584584 | 161584878 | E069 | 19426 |
chr6 | 161585093 | 161585230 | E069 | 19935 |
chr6 | 161586054 | 161586117 | E069 | 20896 |
chr6 | 161586356 | 161586444 | E069 | 21198 |
chr6 | 161587265 | 161587315 | E069 | 22107 |
chr6 | 161587401 | 161587451 | E069 | 22243 |
chr6 | 161588785 | 161588835 | E069 | 23627 |
chr6 | 161588862 | 161588939 | E069 | 23704 |
chr6 | 161588971 | 161589021 | E069 | 23813 |
chr6 | 161589224 | 161590023 | E069 | 24066 |
chr6 | 161590288 | 161590419 | E069 | 25130 |
chr6 | 161590532 | 161590588 | E069 | 25374 |
chr6 | 161590711 | 161591801 | E069 | 25553 |
chr6 | 161592100 | 161592220 | E069 | 26942 |
chr6 | 161592282 | 161592345 | E069 | 27124 |
chr6 | 161592401 | 161592463 | E069 | 27243 |
chr6 | 161602164 | 161602452 | E069 | 37006 |
chr6 | 161602733 | 161602838 | E069 | 37575 |
chr6 | 161604870 | 161605007 | E069 | 39712 |
chr6 | 161605059 | 161605155 | E069 | 39901 |
chr6 | 161610297 | 161610366 | E069 | 45139 |
chr6 | 161610541 | 161610621 | E069 | 45383 |
chr6 | 161610832 | 161610912 | E069 | 45674 |
chr6 | 161611166 | 161611216 | E069 | 46008 |
chr6 | 161612080 | 161612374 | E069 | 46922 |
chr6 | 161612571 | 161612615 | E069 | 47413 |
chr6 | 161612690 | 161612763 | E069 | 47532 |
chr6 | 161590288 | 161590419 | E070 | 25130 |
chr6 | 161590532 | 161590588 | E070 | 25374 |
chr6 | 161590711 | 161591801 | E070 | 25553 |
chr6 | 161592100 | 161592220 | E070 | 26942 |
chr6 | 161592282 | 161592345 | E070 | 27124 |
chr6 | 161555775 | 161555853 | E071 | -9305 |
chr6 | 161556079 | 161556156 | E071 | -9002 |
chr6 | 161556224 | 161556290 | E071 | -8868 |
chr6 | 161556371 | 161556427 | E071 | -8731 |
chr6 | 161556533 | 161556583 | E071 | -8575 |
chr6 | 161556620 | 161556797 | E071 | -8361 |
chr6 | 161556838 | 161557078 | E071 | -8080 |
chr6 | 161557230 | 161557392 | E071 | -7766 |
chr6 | 161557432 | 161557681 | E071 | -7477 |
chr6 | 161559263 | 161559689 | E071 | -5469 |
chr6 | 161559817 | 161559897 | E071 | -5261 |
chr6 | 161559976 | 161560066 | E071 | -5092 |
chr6 | 161560102 | 161560234 | E071 | -4924 |
chr6 | 161560510 | 161560620 | E071 | -4538 |
chr6 | 161560811 | 161561005 | E071 | -4153 |
chr6 | 161561024 | 161561101 | E071 | -4057 |
chr6 | 161579580 | 161579630 | E071 | 14422 |
chr6 | 161581297 | 161581655 | E071 | 16139 |
chr6 | 161581768 | 161581850 | E071 | 16610 |
chr6 | 161581922 | 161581978 | E071 | 16764 |
chr6 | 161582718 | 161582802 | E071 | 17560 |
chr6 | 161583013 | 161583207 | E071 | 17855 |
chr6 | 161583304 | 161583376 | E071 | 18146 |
chr6 | 161583571 | 161583643 | E071 | 18413 |
chr6 | 161583820 | 161584120 | E071 | 18662 |
chr6 | 161584340 | 161584389 | E071 | 19182 |
chr6 | 161584584 | 161584878 | E071 | 19426 |
chr6 | 161585093 | 161585230 | E071 | 19935 |
chr6 | 161586054 | 161586117 | E071 | 20896 |
chr6 | 161586356 | 161586444 | E071 | 21198 |
chr6 | 161587265 | 161587315 | E071 | 22107 |
chr6 | 161587401 | 161587451 | E071 | 22243 |
chr6 | 161587830 | 161587870 | E071 | 22672 |
chr6 | 161587902 | 161587942 | E071 | 22744 |
chr6 | 161588053 | 161588103 | E071 | 22895 |
chr6 | 161588238 | 161588288 | E071 | 23080 |
chr6 | 161588545 | 161588646 | E071 | 23387 |
chr6 | 161588785 | 161588835 | E071 | 23627 |
chr6 | 161588862 | 161588939 | E071 | 23704 |
chr6 | 161588971 | 161589021 | E071 | 23813 |
chr6 | 161589224 | 161590023 | E071 | 24066 |
chr6 | 161590288 | 161590419 | E071 | 25130 |
chr6 | 161590532 | 161590588 | E071 | 25374 |
chr6 | 161590711 | 161591801 | E071 | 25553 |
chr6 | 161592100 | 161592220 | E071 | 26942 |
chr6 | 161601390 | 161601444 | E071 | 36232 |
chr6 | 161602164 | 161602452 | E071 | 37006 |
chr6 | 161602733 | 161602838 | E071 | 37575 |
chr6 | 161609708 | 161609819 | E071 | 44550 |
chr6 | 161609868 | 161609918 | E071 | 44710 |
chr6 | 161610297 | 161610366 | E071 | 45139 |
chr6 | 161610541 | 161610621 | E071 | 45383 |
chr6 | 161610832 | 161610912 | E071 | 45674 |
chr6 | 161611166 | 161611216 | E071 | 46008 |
chr6 | 161612080 | 161612374 | E071 | 46922 |
chr6 | 161555483 | 161555734 | E072 | -9424 |
chr6 | 161555775 | 161555853 | E072 | -9305 |
chr6 | 161556079 | 161556156 | E072 | -9002 |
chr6 | 161556224 | 161556290 | E072 | -8868 |
chr6 | 161556371 | 161556427 | E072 | -8731 |
chr6 | 161556533 | 161556583 | E072 | -8575 |
chr6 | 161556620 | 161556797 | E072 | -8361 |
chr6 | 161556838 | 161557078 | E072 | -8080 |
chr6 | 161557932 | 161557982 | E072 | -7176 |
chr6 | 161559263 | 161559689 | E072 | -5469 |
chr6 | 161559976 | 161560066 | E072 | -5092 |
chr6 | 161560102 | 161560234 | E072 | -4924 |
chr6 | 161560510 | 161560620 | E072 | -4538 |
chr6 | 161581768 | 161581850 | E072 | 16610 |
chr6 | 161581922 | 161581978 | E072 | 16764 |
chr6 | 161582011 | 161582165 | E072 | 16853 |
chr6 | 161582718 | 161582802 | E072 | 17560 |
chr6 | 161583013 | 161583207 | E072 | 17855 |
chr6 | 161583304 | 161583376 | E072 | 18146 |
chr6 | 161583571 | 161583643 | E072 | 18413 |
chr6 | 161583820 | 161584120 | E072 | 18662 |
chr6 | 161584340 | 161584389 | E072 | 19182 |
chr6 | 161584584 | 161584878 | E072 | 19426 |
chr6 | 161585093 | 161585230 | E072 | 19935 |
chr6 | 161586054 | 161586117 | E072 | 20896 |
chr6 | 161587265 | 161587315 | E072 | 22107 |
chr6 | 161587401 | 161587451 | E072 | 22243 |
chr6 | 161589224 | 161590023 | E072 | 24066 |
chr6 | 161590288 | 161590419 | E072 | 25130 |
chr6 | 161590532 | 161590588 | E072 | 25374 |
chr6 | 161590711 | 161591801 | E072 | 25553 |
chr6 | 161592100 | 161592220 | E072 | 26942 |
chr6 | 161593236 | 161593312 | E072 | 28078 |
chr6 | 161602164 | 161602452 | E072 | 37006 |
chr6 | 161602733 | 161602838 | E072 | 37575 |
chr6 | 161607487 | 161607823 | E072 | 42329 |
chr6 | 161608113 | 161608352 | E072 | 42955 |
chr6 | 161610297 | 161610366 | E072 | 45139 |
chr6 | 161610541 | 161610621 | E072 | 45383 |
chr6 | 161610832 | 161610912 | E072 | 45674 |
chr6 | 161611166 | 161611216 | E072 | 46008 |
chr6 | 161582220 | 161582270 | E073 | 17062 |
chr6 | 161582511 | 161582571 | E073 | 17353 |
chr6 | 161582718 | 161582802 | E073 | 17560 |
chr6 | 161583013 | 161583207 | E073 | 17855 |
chr6 | 161583820 | 161584120 | E073 | 18662 |
chr6 | 161584340 | 161584389 | E073 | 19182 |
chr6 | 161589224 | 161590023 | E073 | 24066 |
chr6 | 161590288 | 161590419 | E073 | 25130 |
chr6 | 161590532 | 161590588 | E073 | 25374 |
chr6 | 161590711 | 161591801 | E073 | 25553 |
chr6 | 161592100 | 161592220 | E073 | 26942 |
chr6 | 161602164 | 161602452 | E073 | 37006 |
chr6 | 161609708 | 161609819 | E073 | 44550 |
chr6 | 161609868 | 161609918 | E073 | 44710 |
chr6 | 161610297 | 161610366 | E073 | 45139 |
chr6 | 161610541 | 161610621 | E073 | 45383 |
chr6 | 161555775 | 161555853 | E074 | -9305 |
chr6 | 161556079 | 161556156 | E074 | -9002 |
chr6 | 161556224 | 161556290 | E074 | -8868 |
chr6 | 161556371 | 161556427 | E074 | -8731 |
chr6 | 161556533 | 161556583 | E074 | -8575 |
chr6 | 161556620 | 161556797 | E074 | -8361 |
chr6 | 161556838 | 161557078 | E074 | -8080 |
chr6 | 161557230 | 161557392 | E074 | -7766 |
chr6 | 161557432 | 161557681 | E074 | -7477 |
chr6 | 161558042 | 161558209 | E074 | -6949 |
chr6 | 161559263 | 161559689 | E074 | -5469 |
chr6 | 161559817 | 161559897 | E074 | -5261 |
chr6 | 161559976 | 161560066 | E074 | -5092 |
chr6 | 161560102 | 161560234 | E074 | -4924 |
chr6 | 161560510 | 161560620 | E074 | -4538 |
chr6 | 161581768 | 161581850 | E074 | 16610 |
chr6 | 161581922 | 161581978 | E074 | 16764 |
chr6 | 161582011 | 161582165 | E074 | 16853 |
chr6 | 161582220 | 161582270 | E074 | 17062 |
chr6 | 161582511 | 161582571 | E074 | 17353 |
chr6 | 161582718 | 161582802 | E074 | 17560 |
chr6 | 161583013 | 161583207 | E074 | 17855 |
chr6 | 161583304 | 161583376 | E074 | 18146 |
chr6 | 161583571 | 161583643 | E074 | 18413 |
chr6 | 161583820 | 161584120 | E074 | 18662 |
chr6 | 161584340 | 161584389 | E074 | 19182 |
chr6 | 161584584 | 161584878 | E074 | 19426 |
chr6 | 161585093 | 161585230 | E074 | 19935 |
chr6 | 161586054 | 161586117 | E074 | 20896 |
chr6 | 161586356 | 161586444 | E074 | 21198 |
chr6 | 161587830 | 161587870 | E074 | 22672 |
chr6 | 161587902 | 161587942 | E074 | 22744 |
chr6 | 161588053 | 161588103 | E074 | 22895 |
chr6 | 161588785 | 161588835 | E074 | 23627 |
chr6 | 161588862 | 161588939 | E074 | 23704 |
chr6 | 161588971 | 161589021 | E074 | 23813 |
chr6 | 161589224 | 161590023 | E074 | 24066 |
chr6 | 161590288 | 161590419 | E074 | 25130 |
chr6 | 161590532 | 161590588 | E074 | 25374 |
chr6 | 161590711 | 161591801 | E074 | 25553 |
chr6 | 161592100 | 161592220 | E074 | 26942 |
chr6 | 161601390 | 161601444 | E074 | 36232 |
chr6 | 161602164 | 161602452 | E074 | 37006 |
chr6 | 161602733 | 161602838 | E074 | 37575 |
chr6 | 161604870 | 161605007 | E074 | 39712 |
chr6 | 161605059 | 161605155 | E074 | 39901 |
chr6 | 161605334 | 161605374 | E074 | 40176 |
chr6 | 161610297 | 161610366 | E074 | 45139 |
chr6 | 161610541 | 161610621 | E074 | 45383 |
chr6 | 161610832 | 161610912 | E074 | 45674 |
chr6 | 161611166 | 161611216 | E074 | 46008 |
chr6 | 161612080 | 161612374 | E074 | 46922 |
chr6 | 161612571 | 161612615 | E074 | 47413 |
chr6 | 161612690 | 161612763 | E074 | 47532 |
chr6 | 161612849 | 161612899 | E074 | 47691 |
chr6 | 161612940 | 161612990 | E074 | 47782 |
chr6 | 161530998 | 161531048 | E081 | -34110 |
chr6 | 161531097 | 161531364 | E081 | -33794 |
chr6 | 161531427 | 161531477 | E081 | -33681 |
chr6 | 161531482 | 161531662 | E081 | -33496 |
chr6 | 161531764 | 161531924 | E081 | -33234 |
chr6 | 161531935 | 161531995 | E081 | -33163 |
chr6 | 161531996 | 161532160 | E081 | -32998 |
chr6 | 161589224 | 161590023 | E081 | 24066 |
chr6 | 161590711 | 161591801 | E081 | 25553 |
chr6 | 161609708 | 161609819 | E081 | 44550 |
chr6 | 161609868 | 161609918 | E081 | 44710 |
chr6 | 161589224 | 161590023 | E082 | 24066 |
chr6 | 161590288 | 161590419 | E082 | 25130 |
chr6 | 161590532 | 161590588 | E082 | 25374 |
chr6 | 161590711 | 161591801 | E082 | 25553 |