| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 19 | NC_000019.10:g.21674425T>G |
| GRCh37.p13 chr 19 | NC_000019.9:g.21857227T>G |
| GRCh38.p7 chr 19 alt locus HSCHR19_2_CTG2 | NW_003315964.2:g.35622T>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | T=0.893 | G=0.107 |
| 1000Genomes | American | Sub | 694 | T=0.370 | G=0.630 |
| 1000Genomes | East Asian | Sub | 1008 | T=0.438 | G=0.562 |
| 1000Genomes | Europe | Sub | 1006 | T=0.425 | G=0.575 |
| 1000Genomes | Global | Study-wide | 5008 | T=0.542 | G=0.458 |
| 1000Genomes | South Asian | Sub | 978 | T=0.420 | G=0.580 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.419 | G=0.581 |
| The Genome Aggregation Database | African | Sub | 8716 | T=0.834 | G=0.166 |
| The Genome Aggregation Database | American | Sub | 834 | T=0.380 | G=0.620 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | T=0.389 | G=0.611 |
| The Genome Aggregation Database | Europe | Sub | 18478 | T=0.419 | G=0.581 |
| The Genome Aggregation Database | Global | Study-wide | 29946 | T=0.536 | G=0.463 |
| The Genome Aggregation Database | Other | Sub | 302 | T=0.350 | G=0.650 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.574 | G=0.425 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.410 | G=0.590 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21703634 | A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS | J Psychiatr Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs12232841 | 5.93E-05 | alcohol dependence | 21703634 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr19:21857227 | RP11-420K14.3 | ENSG00000268535.1 | T>G | 1.4096e-14 | -35097 | Cerebellum |
| Chr19:21857227 | RP11-420K14.3 | ENSG00000268535.1 | T>G | 2.0232e-15 | -35097 | Frontal_Cortex_BA9 |
| Chr19:21857227 | RP11-420K14.3 | ENSG00000268535.1 | T>G | 8.0717e-13 | -35097 | Hypothalamus |
| Chr19:21857227 | RP11-420K14.3 | ENSG00000268535.1 | T>G | 1.0023e-12 | -35097 | Cerebellar_Hemisphere |
| Chr19:21857227 | VN1R84P | ENSG00000268117.1 | T>G | 1.0266e-19 | -45610 | Cerebellar_Hemisphere |
| Chr19:21857227 | RP11-420K14.3 | ENSG00000268535.1 | T>G | 1.9463e-8 | -35097 | Brain_Spinal_cord_cervical |
| Chr19:21857227 | RP11-420K14.3 | ENSG00000268535.1 | T>G | 3.6263e-9 | -35097 | Substantia_nigra |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.