SNP Detail Info-rs12240995

Molecule type	Change	Amino acid[Codon]	SO Term
CACNB2 transcript variant 1	NM_000724.3:c.	N/A	Intron Variant
CACNB2 transcript variant 9	NM_001167945.1:c.	N/A	Intron Variant
CACNB2 transcript variant 6	NM_201571.3:c.	N/A	Intron Variant
CACNB2 transcript variant 8	NM_201572.3:c.	N/A	Intron Variant
CACNB2 transcript variant 3	NM_201590.2:c.	N/A	Intron Variant
CACNB2 transcript variant 5	NM_201593.2:c.	N/A	Intron Variant
CACNB2 transcript variant 2	NM_201596.2:c.	N/A	Intron Variant
CACNB2 transcript variant 4	NM_201597.2:c.	N/A	Intron Variant
CACNB2 transcript variant 7	NM_201570.2:c.	N/A	Genic Upstream Transcript Variant
CACNB2 transcript variant X2	XM_011519659.2:c.	N/A	Intron Variant
CACNB2 transcript variant X4	XM_011519660.2:c.	N/A	Intron Variant
CACNB2 transcript variant X3	XM_005252588.3:c.	N/A	Genic Upstream Transcript Variant
CACNB2 transcript variant X5	XM_005252591.3:c.	N/A	Genic Upstream Transcript Variant
CACNB2 transcript variant X1	XM_006717502.3:c.	N/A	Genic Upstream Transcript Variant
CACNB2 transcript variant X4	XM_017016625.1:c.	N/A	Genic Upstream Transcript Variant
CACNB2 transcript variant X6	XR_001747198.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.874	C=0.126
1000Genomes	American	Sub	694	A=0.820	C=0.180
1000Genomes	East Asian	Sub	1008	A=0.961	C=0.039
1000Genomes	Europe	Sub	1006	A=0.878	C=0.122
1000Genomes	Global	Study-wide	5008	A=0.893	C=0.107
1000Genomes	South Asian	Sub	978	A=0.920	C=0.080
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.878	C=0.122
The Genome Aggregation Database	African	Sub	8718	A=0.871	C=0.129
The Genome Aggregation Database	American	Sub	838	A=0.780	C=0.220
The Genome Aggregation Database	East Asian	Sub	1620	A=0.966	C=0.034
The Genome Aggregation Database	Europe	Sub	18500	A=0.880	C=0.119
The Genome Aggregation Database	Global	Study-wide	29978	A=0.880	C=0.119
The Genome Aggregation Database	Other	Sub	302	A=0.930	C=0.070
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.869	C=0.130
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.867	C=0.133

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs12240995	1.33E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr10	18592367	18592507	E068	-44725
chr10	18592983	18593043	E068	-44189
chr10	18621323	18621721	E068	-15511
chr10	18622208	18622331	E068	-14901
chr10	18640386	18641793	E068	3154
chr10	18683376	18683426	E068	46144
chr10	18683513	18683567	E068	46281
chr10	18683843	18683900	E068	46611
chr10	18595087	18595216	E069	-42016
chr10	18639373	18639454	E070	2141
chr10	18639457	18639914	E070	2225
chr10	18639373	18639454	E072	2141
chr10	18639457	18639914	E072	2225
chr10	18597286	18597399	E081	-39833
chr10	18598174	18598281	E081	-38951
chr10	18598284	18598342	E081	-38890
chr10	18628793	18628843	E081	-8389
chr10	18628919	18629064	E081	-8168
chr10	18639236	18639295	E082	2004
chr10	18639373	18639454	E082	2141
chr10	18639457	18639914	E082	2225
chr10	18640061	18640164	E082	2829
chr10	18640243	18640314	E082	3011

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr10	18629331	18630268	E067	-6964
chr10	18629331	18630268	E068	-6964
chr10	18629331	18630268	E069	-6964
chr10	18630289	18630474	E069	-6758
chr10	18629331	18630268	E071	-6964
chr10	18629331	18630268	E072	-6964
chr10	18630289	18630474	E072	-6758
chr10	18629331	18630268	E073	-6964
chr10	18630289	18630474	E073	-6758
chr10	18629331	18630268	E082	-6964

rs12240995