rs12340210

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0126 (3798/29924,GnomAD)
T=0121 (3549/29118,TOPMED)
T=0206 (1030/5008,1000G)
T=0067 (259/3854,ALSPAC)
T=0063 (235/3708,TWINSUK)
chr9:131758437 (GRCh38.p7) (9q34.13)
AD
GWASdb2
1   publication(s)
See rs on genome
191 Enhancers around
4 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.131758437C>T
GRCh37.p13 chr 9NC_000009.11:g.134633824C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.843T=0.157
1000GenomesAmericanSub694C=0.820T=0.180
1000GenomesEast AsianSub1008C=0.643T=0.357
1000GenomesEuropeSub1006C=0.875T=0.125
1000GenomesGlobalStudy-wide5008C=0.794T=0.206
1000GenomesSouth AsianSub978C=0.790T=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.933T=0.067
The Genome Aggregation DatabaseAfricanSub8708C=0.860T=0.140
The Genome Aggregation DatabaseAmericanSub838C=0.840T=0.160
The Genome Aggregation DatabaseEast AsianSub1614C=0.607T=0.393
The Genome Aggregation DatabaseEuropeSub18462C=0.903T=0.096
The Genome Aggregation DatabaseGlobalStudy-wide29924C=0.873T=0.126
The Genome Aggregation DatabaseOtherSub302C=0.930T=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.878T=0.121
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.937T=0.063
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs123402101.37E-05alcohol consumption23953852

eQTL of rs12340210 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs12340210 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9134602669134605270E067-28554
chr9134606114134608087E067-25737
chr9134608088134610126E067-23698
chr9134610457134611652E067-22172
chr9134611701134611751E067-22073
chr9134611843134612361E067-21463
chr9134612400134612469E067-21355
chr9134612488134612694E067-21130
chr9134612703134612885E067-20939
chr9134612894134613028E067-20796
chr9134637506134637669E0673682
chr9134637675134638289E0673851
chr9134638393134638495E0674569
chr9134584178134584241E068-49583
chr9134584817134586127E068-47697
chr9134588542134588739E068-45085
chr9134588820134589089E068-44735
chr9134590148134590238E068-43586
chr9134590386134590495E068-43329
chr9134590577134590627E068-43197
chr9134590738134590788E068-43036
chr9134591607134591853E068-41971
chr9134592303134592413E068-41411
chr9134592540134592690E068-41134
chr9134592727134592777E068-41047
chr9134593468134593863E068-39961
chr9134594152134595264E068-38560
chr9134595338134595411E068-38413
chr9134595758134595941E068-37883
chr9134602495134602622E068-31202
chr9134602669134605270E068-28554
chr9134606114134608087E068-25737
chr9134608088134610126E068-23698
chr9134610141134610425E068-23399
chr9134610457134611652E068-22172
chr9134611701134611751E068-22073
chr9134611843134612361E068-21463
chr9134612400134612469E068-21355
chr9134612488134612694E068-21130
chr9134612703134612885E068-20939
chr9134612894134613028E068-20796
chr9134622606134623099E068-10725
chr9134630950134631305E068-2519
chr9134631329134631479E068-2345
chr9134595758134595941E069-37883
chr9134595968134596014E069-37810
chr9134602669134605270E069-28554
chr9134606114134608087E069-25737
chr9134608088134610126E069-23698
chr9134610141134610425E069-23399
chr9134610457134611652E069-22172
chr9134611701134611751E069-22073
chr9134611843134612361E069-21463
chr9134612400134612469E069-21355
chr9134612488134612694E069-21130
chr9134597562134598017E070-35807
chr9134606114134608087E070-25737
chr9134660645134660748E07026821
chr9134587450134587646E071-46178
chr9134587756134588070E071-45754
chr9134593295134593421E071-40403
chr9134593468134593863E071-39961
chr9134594152134595264E071-38560
chr9134599980134601091E071-32733
chr9134602669134605270E071-28554
chr9134608088134610126E071-23698
chr9134610141134610425E071-23399
chr9134610457134611652E071-22172
chr9134611701134611751E071-22073
chr9134612703134612885E071-20939
chr9134612894134613028E071-20796
chr9134618587134619278E071-14546
chr9134622606134623099E071-10725
chr9134593468134593863E072-39961
chr9134594152134595264E072-38560
chr9134599980134601091E072-32733
chr9134602669134605270E072-28554
chr9134606114134608087E072-25737
chr9134611701134611751E072-22073
chr9134612400134612469E072-21355
chr9134612488134612694E072-21130
chr9134612703134612885E072-20939
chr9134612894134613028E072-20796
chr9134588542134588739E073-45085
chr9134588820134589089E073-44735
chr9134590148134590238E073-43586
chr9134590386134590495E073-43329
chr9134590577134590627E073-43197
chr9134590738134590788E073-43036
chr9134593468134593863E073-39961
chr9134602669134605270E073-28554
chr9134606114134608087E073-25737
chr9134608088134610126E073-23698
chr9134610141134610425E073-23399
chr9134610457134611652E073-22172
chr9134611701134611751E073-22073
chr9134611843134612361E073-21463
chr9134612400134612469E073-21355
chr9134612488134612694E073-21130
chr9134612703134612885E073-20939
chr9134637675134638289E0733851
chr9134591385134591606E074-42218
chr9134591607134591853E074-41971
chr9134592303134592413E074-41411
chr9134592540134592690E074-41134
chr9134592727134592777E074-41047
chr9134593171134593279E074-40545
chr9134593295134593421E074-40403
chr9134593468134593863E074-39961
chr9134594152134595264E074-38560
chr9134595338134595411E074-38413
chr9134595758134595941E074-37883
chr9134595968134596014E074-37810
chr9134596057134596144E074-37680
chr9134596507134596608E074-37216
chr9134596688134596776E074-37048
chr9134596788134596964E074-36860
chr9134596978134597095E074-36729
chr9134602669134605270E074-28554
chr9134606114134608087E074-25737
chr9134608088134610126E074-23698
chr9134610141134610425E074-23399
chr9134610457134611652E074-22172
chr9134611701134611751E074-22073
chr9134611843134612361E074-21463
chr9134612400134612469E074-21355
chr9134612488134612694E074-21130
chr9134612703134612885E074-20939
chr9134637506134637669E0743682
chr9134637675134638289E0743851
chr9134638393134638495E0744569
chr9134595758134595941E081-37883
chr9134595968134596014E081-37810
chr9134596057134596144E081-37680
chr9134596507134596608E081-37216
chr9134596688134596776E081-37048
chr9134596788134596964E081-36860
chr9134596978134597095E081-36729
chr9134597562134598017E081-35807
chr9134598039134598143E081-35681
chr9134599062134599279E081-34545
chr9134599530134599620E081-34204
chr9134599633134599704E081-34120
chr9134599980134601091E081-32733
chr9134601486134601555E081-32269
chr9134601614134601677E081-32147
chr9134601706134601888E081-31936
chr9134601982134602365E081-31459
chr9134602495134602622E081-31202
chr9134602669134605270E081-28554
chr9134606114134608087E081-25737
chr9134608088134610126E081-23698
chr9134610457134611652E081-22172
chr9134611701134611751E081-22073
chr9134611843134612361E081-21463
chr9134612400134612469E081-21355
chr9134612488134612694E081-21130
chr9134612703134612885E081-20939
chr9134612894134613028E081-20796
chr9134613419134613537E081-20287
chr9134630950134631305E081-2519
chr9134637506134637669E0813682
chr9134637675134638289E0813851
chr9134638393134638495E0814569
chr9134681133134681288E08147309
chr9134681298134681661E08147474
chr9134681725134681886E08147901
chr9134681917134682051E08148093
chr9134682174134682292E08148350
chr9134596507134596608E082-37216
chr9134596688134596776E082-37048
chr9134596788134596964E082-36860
chr9134596978134597095E082-36729
chr9134597562134598017E082-35807
chr9134598039134598143E082-35681
chr9134598610134598666E082-35158
chr9134598717134598875E082-34949
chr9134599062134599279E082-34545
chr9134599530134599620E082-34204
chr9134599633134599704E082-34120
chr9134599980134601091E082-32733
chr9134602669134605270E082-28554
chr9134606114134608087E082-25737
chr9134610141134610425E082-23399
chr9134660645134660748E08226821
chr9134660779134660856E08226955
chr9134681133134681288E08247309
chr9134681298134681661E08247474
chr9134681725134681886E08247901
chr9134681917134682051E08248093
chr9134682174134682292E08248350










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr9134614129134616002E068-17822
chr9134614129134616002E070-17822
chr9134614129134616002E073-17822
chr9134614129134616002E074-17822