| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.63730392A>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.63026219A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.921 | G=0.079 |
| 1000Genomes | American | Sub | 694 | A=0.800 | G=0.200 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.640 | G=0.360 |
| 1000Genomes | Europe | Sub | 1006 | A=0.790 | G=0.210 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.773 | G=0.227 |
| 1000Genomes | South Asian | Sub | 978 | A=0.670 | G=0.330 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.812 | G=0.188 |
| The Genome Aggregation Database | African | Sub | 8720 | A=0.919 | G=0.081 |
| The Genome Aggregation Database | American | Sub | 830 | A=0.840 | G=0.160 |
| The Genome Aggregation Database | East Asian | Sub | 1574 | A=0.637 | G=0.363 |
| The Genome Aggregation Database | Europe | Sub | 18416 | A=0.811 | G=0.188 |
| The Genome Aggregation Database | Global | Study-wide | 29842 | A=0.834 | G=0.165 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.770 | G=0.230 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.843 | G=0.156 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.820 | G=0.180 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21703634 | A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS | J Psychiatr Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs12515008 | 8.3E-05 | alcohol dependence | 21703634 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 63067886 | 63067974 | E081 | 41667 |
| chr5 | 63068082 | 63068414 | E081 | 41863 |
| chr5 | 63068477 | 63068538 | E081 | 42258 |
| chr5 | 62982472 | 62982611 | E082 | -43608 |
| chr5 | 62982911 | 62983005 | E082 | -43214 |
| chr5 | 62983105 | 62983155 | E082 | -43064 |
| chr5 | 62983767 | 62983849 | E082 | -42370 |
| chr5 | 62983854 | 62983965 | E082 | -42254 |
| chr5 | 62984057 | 62984141 | E082 | -42078 |