SNP Detail Info-rs12624655

Organism: Homo sapiens

Alleles: G>A / G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0103 (3110/29972,GnomAD)
T=0108 (3154/29118,TOPMED)
T=0170 (852/5008,1000G)
T=0063 (244/3854,ALSPAC)
T=0078 (288/3708,TWINSUK)

Position: chr20:48176216 (GRCh38.p7) (20q13.13)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.895	T=0.105
1000Genomes	American	Sub	694	G=0.840	T=0.160
1000Genomes	East Asian	Sub	1008	G=0.708	T=0.292
1000Genomes	Europe	Sub	1006	G=0.931	T=0.069
1000Genomes	Global	Study-wide	5008	G=0.830	T=0.170
1000Genomes	South Asian	Sub	978	G=0.760	T=0.240
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.937	T=0.063
The Genome Aggregation Database	African	Sub	8724	G=0.893	T=0.107
The Genome Aggregation Database	American	Sub	838	G=0.840	T=0.160
The Genome Aggregation Database	East Asian	Sub	1616	G=0.726	T=0.274
The Genome Aggregation Database	Europe	Sub	18492	G=0.915	T=0.084
The Genome Aggregation Database	Global	Study-wide	29972	G=0.896	T=0.103
The Genome Aggregation Database	Other	Sub	302	G=0.880	T=0.120
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.891	T=0.108
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.922	T=0.078

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs12624655	1.07E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs12624655