SNP Detail Info-rs12634678

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.132056472T>G
GRCh37.p13 chr 3	NC_000003.11:g.131775316T>G

Molecule type	Change	Amino acid[Codon]	SO Term
CPNE4 transcript variant 1	NM_001289112.1:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant 3	NM_130808.2:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant 2	NM_153429.1:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant X1	XM_017005693.1:c.	N/A	Intron Variant
CPNE4 transcript variant X6	XM_011512406.2:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant X4	XM_011512407.2:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant X7	XM_011512408.2:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant X2	XM_017005694.1:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant X6	XM_017005695.1:c.	N/A	Genic Upstream Transcript Variant
CPNE4 transcript variant X9	XM_017005696.1:c.	N/A	Genic Upstream Transcript Variant

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105374111 transcript	XR_924489.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.990	G=0.010
1000Genomes	American	Sub	694	T=0.770	G=0.230
1000Genomes	East Asian	Sub	1008	T=0.744	G=0.256
1000Genomes	Europe	Sub	1006	T=0.924	G=0.076
1000Genomes	Global	Study-wide	5008	T=0.884	G=0.116
1000Genomes	South Asian	Sub	978	T=0.920	G=0.080
The Genome Aggregation Database	African	Sub	5468	T=0.952	G=0.048
The Genome Aggregation Database	American	Sub	626	T=0.730	G=0.270
The Genome Aggregation Database	East Asian	Sub	1304	T=0.707	G=0.293
The Genome Aggregation Database	Europe	Sub	9676	T=0.884	G=0.116
The Genome Aggregation Database	Global	Study-wide	17212	T=0.886	G=0.113
The Genome Aggregation Database	Other	Sub	138	T=0.860	G=0.140
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.935	G=0.064

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs12634678	0.000119	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	131748475	131748555	E069	-26761
chr3	131789971	131790220	E069	14655
chr3	131756874	131757345	E081	-17971
chr3	131726362	131726707	E082	-48609
chr3	131728083	131728437	E082	-46879
chr3	131755968	131756204	E082	-19112

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr3	131752209	131752288	E067	-23028
chr3	131752293	131752483	E067	-22833
chr3	131752711	131752761	E067	-22555
chr3	131752961	131753310	E067	-22006
chr3	131753328	131754152	E067	-21164
chr3	131753328	131754152	E068	-21164
chr3	131752293	131752483	E069	-22833
chr3	131752711	131752761	E069	-22555
chr3	131753328	131754152	E069	-21164
chr3	131752209	131752288	E070	-23028
chr3	131752293	131752483	E071	-22833
chr3	131752711	131752761	E071	-22555
chr3	131752293	131752483	E072	-22833
chr3	131752711	131752761	E072	-22555
chr3	131752961	131753310	E072	-22006
chr3	131753328	131754152	E072	-21164
chr3	131752209	131752288	E073	-23028
chr3	131752293	131752483	E073	-22833
chr3	131752711	131752761	E073	-22555
chr3	131752961	131753310	E073	-22006
chr3	131753328	131754152	E073	-21164
chr3	131753328	131754152	E074	-21164
chr3	131752209	131752288	E082	-23028
chr3	131752293	131752483	E082	-22833

rs12634678