SNP Detail Info-rs12724903

Organism: Homo sapiens

Alleles: A>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0052 (1560/29932,GnomAD)
C=0035 (1026/29118,TOPMED)
C=0020 (100/5008,1000G)
C=0063 (243/3854,ALSPAC)
C=0073 (270/3708,TWINSUK)

Position: chr1:158609075 (GRCh38.p7) (1q23.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.998	C=0.002
1000Genomes	American	Sub	694	A=0.980	C=0.020
1000Genomes	East Asian	Sub	1008	A=1.000	C=0.000
1000Genomes	Europe	Sub	1006	A=0.933	C=0.067
1000Genomes	Global	Study-wide	5008	A=0.980	C=0.020
1000Genomes	South Asian	Sub	978	A=0.980	C=0.020
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.937	C=0.063
The Genome Aggregation Database	African	Sub	8720	A=0.989	C=0.011
The Genome Aggregation Database	American	Sub	838	A=0.960	C=0.040
The Genome Aggregation Database	East Asian	Sub	1606	A=0.997	C=0.003
The Genome Aggregation Database	Europe	Sub	18466	A=0.923	C=0.076
The Genome Aggregation Database	Global	Study-wide	29932	A=0.947	C=0.052
The Genome Aggregation Database	Other	Sub	302	A=0.960	C=0.040
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.964	C=0.035
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.927	C=0.073

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs12724903	0.00013	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs12724903