SNP Detail Info-rs12756158

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0327 (9808/29912,GnomAD)
G=0371 (10806/29116,TOPMED)
G=0326 (1635/5008,1000G)
G=0273 (1051/3854,ALSPAC)
G=0278 (1031/3708,TWINSUK)

Position: chr1:238311294 (GRCh38.p7) (1q43)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.238311294A>G
GRCh37.p13 chr 1	NC_000001.10:g.238474594A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.504	G=0.496
1000Genomes	American	Sub	694	A=0.620	G=0.380
1000Genomes	East Asian	Sub	1008	A=0.855	G=0.145
1000Genomes	Europe	Sub	1006	A=0.704	G=0.296
1000Genomes	Global	Study-wide	5008	A=0.674	G=0.326
1000Genomes	South Asian	Sub	978	A=0.720	G=0.280
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.727	G=0.273
The Genome Aggregation Database	African	Sub	8700	A=0.538	G=0.462
The Genome Aggregation Database	American	Sub	834	A=0.660	G=0.340
The Genome Aggregation Database	East Asian	Sub	1614	A=0.879	G=0.121
The Genome Aggregation Database	Europe	Sub	18462	A=0.717	G=0.282
The Genome Aggregation Database	Global	Study-wide	29912	A=0.672	G=0.327
The Genome Aggregation Database	Other	Sub	302	A=0.680	G=0.320
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.628	G=0.371
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.722	G=0.278

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs12756158	0.00094	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs12756158