SNP Detail Info-rs12858772

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0286 (5891/20548,GnomAD)
T=0272 (1025/3775,1000G)
T=0242 (899/3708,TWINSUK)
T=0246 (711/2889,ALSPAC)

Position: chrX:117353885 (GRCh38.p7) (Xq23)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.117353885C>T
GRCh37.p13 chr X	NC_000023.10:g.116487848C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	C=0.529	T=0.471
1000Genomes	American	Sub	524	C=0.850	T=0.150
1000Genomes	East Asian	Sub	764	C=0.840	T=0.160
1000Genomes	Europe	Sub	766	C=0.780	T=0.220
1000Genomes	Global	Study-wide	3775	C=0.728	T=0.272
1000Genomes	South Asian	Sub	718	C=0.740	T=0.260
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	C=0.754	T=0.246
The Genome Aggregation Database	African	Sub	5789	C=0.555	T=0.445
The Genome Aggregation Database	American	Sub	603	C=0.850	T=0.150
The Genome Aggregation Database	East Asian	Sub	1008	C=0.853	T=0.147
The Genome Aggregation Database	Europe	Sub	12965	C=0.765	T=0.234
The Genome Aggregation Database	Global	Study-wide	20548	C=0.713	T=0.286
The Genome Aggregation Database	Other	Sub	183	C=0.790	T=0.210
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.758	T=0.242

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs12858772	2.57E-06	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs12858772